AnnotationFuncs: Annotation translation functions

Functions for handling translating between different identifieres using the Biocore Data Team data-packages (e.g. org.Bt.eg.db).

Author
Stefan McKinnon Edwards <stefan.hoj-edwards@agrsci.dk>
Date of publication
None
Maintainer
Stefan McKinnon Edwards <stefan.hoj-edwards@agrsci.dk>
License
GPL-2
Version
1.24.0
URLs

View on Bioconductor

Man pages

AnnotationFuncs-package
Annotation translation functions
dbEscapeString2
Private Escape string...
getEvidenceCodes
Returns GO evidence codes.
getOrthologs
Performs quicker lookup for orthologs in homologe data...
getTableName2
Gets the table name from the INPARANOID style genus names.
mapLists
Replaces contents of list A with elements of list B...
pickGO
Cleans up result from org...
pickRef2
Secret function that does the magic for pickRefSeq.
pickRefSeq
Picks a prioritised RefSeq identifier from a list of...
removeNAs
Removes entries equal NA from list or vector...
translate
Translate between different identifiers...

Files in this package

AnnotationFuncs/DESCRIPTION
AnnotationFuncs/NAMESPACE
AnnotationFuncs/R
AnnotationFuncs/R/annotation-funcs.R
AnnotationFuncs/R/homologe.R
AnnotationFuncs/build
AnnotationFuncs/build/vignette.rds
AnnotationFuncs/inst
AnnotationFuncs/inst/CITATION
AnnotationFuncs/inst/NEWS
AnnotationFuncs/inst/doc
AnnotationFuncs/inst/doc/AnnotationFuncsUserguide.R
AnnotationFuncs/inst/doc/AnnotationFuncsUserguide.Rnw
AnnotationFuncs/inst/doc/AnnotationFuncsUserguide.pdf
AnnotationFuncs/man
AnnotationFuncs/man/AnnotationFuncs-package.Rd
AnnotationFuncs/man/dbEscapeString2.Rd
AnnotationFuncs/man/getEvidenceCodes.Rd
AnnotationFuncs/man/getOrthologs.Rd
AnnotationFuncs/man/getTableName2.Rd
AnnotationFuncs/man/mapLists.Rd
AnnotationFuncs/man/pickGO.Rd
AnnotationFuncs/man/pickRef2.Rd
AnnotationFuncs/man/pickRefSeq.Rd
AnnotationFuncs/man/removeNAs.Rd
AnnotationFuncs/man/translate.Rd
AnnotationFuncs/vignettes
AnnotationFuncs/vignettes/AnnotationFuncsUserguide.Rnw