AnnotationFuncs: Annotation translation functions
Version 1.26.0

Functions for handling translating between different identifieres using the Biocore Data Team data-packages (e.g. org.Bt.eg.db).

AuthorStefan McKinnon Edwards <stefan.hoj-edwards@agrsci.dk>
Bioconductor views AnnotationData Software
Date of publicationNone
MaintainerStefan McKinnon Edwards <stefan.hoj-edwards@agrsci.dk>
LicenseGPL-2
Version1.26.0
URL http://www.iysik.com/index.php?page=annotation-functions
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("AnnotationFuncs")

Getting started

Package overview

Popular man pages

AnnotationFuncs-package: Annotation translation functions
getEvidenceCodes: Returns GO evidence codes.
getOrthologs: Performs quicker lookup for orthologs in homologe data...
getTableName2: Gets the table name from the INPARANOID style genus names.
pickGO: Cleans up result from org...
pickRef2: Secret function that does the magic for pickRefSeq.
pickRefSeq: Picks a prioritised RefSeq identifier from a list of...
See all...

All man pages Function index File listing

Man pages

AnnotationFuncs-package: Annotation translation functions
dbEscapeString2: Private Escape string...
getEvidenceCodes: Returns GO evidence codes.
getOrthologs: Performs quicker lookup for orthologs in homologe data...
getTableName2: Gets the table name from the INPARANOID style genus names.
mapLists: Replaces contents of list A with elements of list B...
pickGO: Cleans up result from org...
pickRef2: Secret function that does the magic for pickRefSeq.
pickRefSeq: Picks a prioritised RefSeq identifier from a list of...
removeNAs: Removes entries equal NA from list or vector...
translate: Translate between different identifiers...

Functions

.dbEscapeString Man page
.getTableName Man page
.pickRef Man page
AnnotationFuncs Man page
dbEscapeString Source code
getEvidenceCodes Man page Source code
getOrthologs Man page Source code
getTableName Source code
mapLists Man page Source code
pickGO Man page Source code
pickRef Source code
pickRefSeq Man page Source code
pickRefSeq.Protein Man page Source code
pickRefSeq.mRNA Man page Source code
removeNAs Man page Source code
translate Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/annotation-funcs.R
R/homologe.R
build
build/vignette.rds
inst
inst/CITATION
inst/NEWS
inst/doc
inst/doc/AnnotationFuncsUserguide.R
inst/doc/AnnotationFuncsUserguide.Rnw
inst/doc/AnnotationFuncsUserguide.pdf
man
man/AnnotationFuncs-package.Rd
man/dbEscapeString2.Rd
man/getEvidenceCodes.Rd
man/getOrthologs.Rd
man/getTableName2.Rd
man/mapLists.Rd
man/pickGO.Rd
man/pickRef2.Rd
man/pickRefSeq.Rd
man/removeNAs.Rd
man/translate.Rd
vignettes
vignettes/AnnotationFuncsUserguide.Rnw
AnnotationFuncs documentation built on May 20, 2017, 9:20 p.m.