Files in AnnotationHubData
Transform public data resources into Bioconductor Data Structures
NEWS
NAMESPACE
DESCRIPTION
appveyor.yml
R/makeUCSCChain.R
R/makeAnnotationHubResource.R
R/updateResources.R
R/makeUCSC2Bit.R
R/makeStandardOrgDbsToSqlite.R
R/makeChEA.R
R/makeEnsemblTwoBit.R
R/makeGrasp2Db.R
R/makeEncodeDCC.R
R/makeNCBIToOrgDbs.R
R/validationFunctions.R
R/ImportPreparer-class.R
R/makeUCSCTracks.R
R/makeEpigenomeRoadmap.R
R/trackWithAuxiliaryTableToGRangesRecipe.R
R/makeStandardTxDbsToSqlite.R
R/makeHaemCode.R
R/webAccessFunctions.R
R/makeEnsemblGtfToGRanges.R
R/Message-class.R
R/makeRefNet.R
R/makeGencodeGFF.R
R/makeInparanoid8ToDbs.R
R/makeEnsemblFasta.R
R/UCSCTrackUpdateChecker.R
R/HubMetadata-class.R
R/makeGencodeFasta.R
R/ahmToJson.R
R/AnnotationHubMetadata-class.R
R/utils.R
R/makedbSNPVCF.R
inst/makefile
inst/doc/IntroductionToAnnotationHubData.Rmd
inst/doc/CreateAnAnnotationPackage.Rmd
inst/doc/IntroductionToAnnotationHubData.html
inst/doc/CreateAnAnnotationPackage.html
inst/extdata/annotation_haemcode.tsv
inst/extdata/haemCodeFileList.txt
inst/extdata/inpDrosPsuedo.rda
inst/extdata/badUCSCTracks/allPossibleTracks.rda
inst/extdata/badUCSCTracks/allBadTracks.rda
inst/extdata/badUCSCTracks/genomeTrackTable.Rda
inst/unitTests/test_ImportPreparer-class.R
inst/unitTests/test_webAccessFunctions.R
inst/unitTests/test_AnnotationHubConstructor.R
inst/unitTests/test_validityFunctions.R
inst/unitTests/test_recipe.R
inst/unitTests/cases/encodeDCCMetadata/tbl.parsedEncodeMetadata.RData
inst/unitTests/cases/encodeDCCMetadata/wgEncodeAwgDnaseUniform.info
inst/unitTests/cases/encodeDCCMetadata/wgEncodeAffyRnaChip.info
inst/scripts/addContributedResources.txt
inst/scripts/CheatSheet.Rmd
inst/scripts/singleContributedResourceTemplate.R
inst/scripts/oldVignettes/AnnotationHubData.Rmd
inst/scripts/oldVignettes/AnnotationHubRecipes.Rmd
build/vignette.rds
tests/AnnotationHubData_unit_tests.R
vignettes/IntroductionToAnnotationHubData.Rmd
vignettes/CreateAnAnnotationPackage.Rmd
man/ImportPreparer-class.Rd
man/makeAnnotationHubMetadata.Rd
man/flog.Rd
man/upload_to_S3.Rd
man/AnnotationHubMetadata-class.Rd
man/validationFunctions.Rd
man/makeEnsemblFasta.Rd
man/AnnotationHubData-package.Rd
man/makeGencodeFasta.Rd
man/makeStandardOrgDbs.Rd
man/updateResources.Rd
