mosaicplot.Assessment: Plot Genes by Category and Length

In AssessORF: Assess Gene Predictions Using Proteomics and Evolutionary Conservation

Description

The mosaicplot method for Assessment object

Usage

## S3 method for class 'Assessment'
mosaicplot(x, ...)

Arguments

x	An object of class Assessment and subclass Results.
...	Further mosaicplot parameters.

Details

mosaicplot.Assessment plots all the genes in the given Results object by category and length. This set of genes includes both the supplied predicted genes as well as open reading frames with proteomics evidence but no predicted start.

The set of genes are separated into ten quantile bins based on the length of the gene/open reading frame. The genes are then plotted by length bin and category in a mosaic format, with each column representing a length bin and each row/block representing a category.

Value

Invisibly returns the input object x

See Also

Assessment-class

Examples

mosaicplot(readRDS(system.file("extdata",
                               "MGAS5005_PreSaved_ResultsObj_Prodigal.rds",
                               package = "AssessORF")))

AssessORF documentation built on Nov. 8, 2020, 4:52 p.m.