BADER: Bayesian Analysis of Differential Expression in RNA Sequencing Data

For RNA sequencing count data, BADER fits a Bayesian hierarchical model. The algorithm returns the posterior probability of differential expression for each gene between two groups A and B. The joint posterior distribution of the variables in the model can be returned in the form of posterior samples, which can be used for further down-stream analyses such as gene set enrichment.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("BADER")
AuthorAndreas Neudecker, Matthias Katzfuss
Bioconductor views DifferentialExpression RNASeq SAGE Sequencing Software
Date of publicationNone
MaintainerAndreas Neudecker <a.neudecker@arcor.de>
LicenseGPL-2
Version1.12.0

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/BADER.R
build
build/vignette.rds
inst
inst/doc
inst/doc/BADER.R
inst/doc/BADER.Rnw
inst/doc/BADER.pdf
man
man/BADER.Rd
src
src/meth.cpp
src/meth.h
vignettes
vignettes/BADER.Rnw
vignettes/BADER.bib

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