AnnotationMFGO: List containing a collection of gene symbols with their...

In BAGS: A Bayesian Approach for Geneset Selection

Description

This dataset contains list containing all the GO terms for the Molecular function ontology with their associated gene symbols, base on the collections provided by the MSigDB from the Broad Institute

Usage

data(AnnotationMFGO)

Format

A list containing the information in the following way:

• AnnotationMFGO[1:3]: The first 3 GO terms of the Molecular Function ontology with their associated gene symbols.

Details

This dataset contains list containing gene symbols associated with their respective GO term, based on the from the MSigDB at the Broad Institute. This dataset enables the construction of the gene groups of interest for the analysis of the methodology proposed.

Author(s)

A. Quiroz-Zarate. [e-mail]

Source

http://www.broadinstitute.org/gsea/msigdb/collections.jsp#C5

References

Quiroz-Zarate A and Quackenbush J (2012). "Manuscript in preparation".

Examples

#- load the dataset
data(AnnotationMFGO,package="BAGS")
#- show the first 20 rows and columns.
AnnotationMFGO[1:3]

BAGS documentation built on Nov. 8, 2020, 11:11 p.m.