BAGS-package: A Bayesian Approach for Geneset Selection (BAGS).
In BAGS: A Bayesian Approach for Geneset Selection

Description Details Author(s) References Examples

Functions to perform geneset significance analysis for data sets with cross-sectional or time course data design. This method is described in detail in the paper soon to be published. This work is done by Alejandro Quiroz-Zarate in collaboration with Benjamin Haibe-Kains and John Quackenbush.

Package:	BAGS
Type:	Package
Version:	2.0
Date:	2013-06-12
License:	Artistics-2.0
LazyLoad:	yes

For a detailed example on the use and manipulation of the functions provided on this package please see the package Vignette.

A. Quiroz-Zarate aquiroz@jimmy.harvard.edu

Quiroz-Zarate, A., Haibe-Kains, B. and Quackenbush, J. Manuscript in preparation (2013).

1	#vignette("BAGS")

Loading required package: breastCancerVDX
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, lengths, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unsplit, which, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.