Man pages for BadRegionFinder
BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage
| BadRegionFinder-package | BadRegionFinder: an R/Bioconductor package for identifying... |
| determineCoverage | Determines the coverage (recommended for whole-genome... |
| determineCoverageQuality | Classifies the determined coverage |
| determineQuantiles | Determines basewise user-defined quantiles |
| determineRegionsOfInterest | Determines the regions of interest |
| plotDetailed | Plots a more detailed overview of the coverage quality |
| plotSummary | Plots a summary of the coverage quality |
| plotSummaryGenes | Plots a summary of the coverage quality concerning the genes... |
| reportBadRegionsDetailed | Gives a detailed report on the coverage quality |
| reportBadRegionsGenes | Sums up the coverage quality on a gene basis |
| reportBadRegionsSummary | Sums up the coverage quality |
