BasicSTARRseq: Basic peak calling on STARR-seq data

Basic peak calling on STARR-seq data based on a method introduced in "Genome-Wide Quantitative Enhancer Activity Maps Identified by STARR-seq" Arnold et al. Science. 2013 Mar 1;339(6123):1074-7. doi: 10.1126/science. 1232542. Epub 2013 Jan 17.

Getting started

Package details

AuthorAnnika Buerger
Bioconductor views Coverage FunctionalGenomics FunctionalPrediction GeneRegulation PeakDetection
MaintainerAnnika Buerger <annika.buerger@ukmuenster.de>
LicenseLGPL-3
Version1.18.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BasicSTARRseq")

Try the BasicSTARRseq package in your browser

Any scripts or data that you put into this service are public.

BasicSTARRseq documentation built on Nov. 8, 2020, 5:58 p.m.