batchQC_condition_adjusted: Returns adjusted data after remove the variation across...

Description Usage Arguments Value Examples

View source: R/utils.R

Description

Returns adjusted data after remove the variation across conditions

Usage

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Arguments

data.matrix

Given data or simulated data from rnaseq_sim()

batch

Batch covariate

condition

Condition covariate of interest

Value

Adjusted data after remove the variation across conditions

Examples

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nbatch <- 3
ncond <- 2
npercond <- 10
data.matrix <- rnaseq_sim(ngenes=50, nbatch=nbatch, ncond=ncond, npercond=
    npercond, basemean=10000, ggstep=50, bbstep=2000, ccstep=800, 
    basedisp=100, bdispstep=-10, swvar=1000, seed=1234)
batch <- rep(1:nbatch, each=ncond*npercond)
condition <- rep(rep(1:ncond, each=npercond), nbatch)
batchQC_condition_adjusted(data.matrix, batch, condition)

BatchQC documentation built on May 31, 2017, 2:55 p.m.