plot_genewise_moments: Visualize gene-wise moments

In BatchQC: Batch Effects Quality Control Software

Description

Visualize gene-wise moments

Usage

plot_genewise_moments(data, batch, robust)

Arguments

data	Given data or simulated data from rnaseq_sim()
batch	Batch covariate
robust	Boolean indicator of using robust (TRUE) or non-robust test (FALSE) in visualization

Value

Gene-wise moments

Examples

nbatch <- 3
ncond <- 2
npercond <- 10
data.matrix <- rnaseq_sim(ngenes=50, nbatch=nbatch, ncond=ncond, npercond=
    npercond, basemean=10000, ggstep=50, bbstep=2000, ccstep=800, 
    basedisp=100, bdispstep=-10, swvar=1000, seed=1234)
batch <- rep(1:nbatch, each=ncond*npercond)
condition <- rep(rep(1:ncond, each=npercond), nbatch)
data_adjusted <- batchQC_condition_adjusted(data.matrix, batch, condition)
gene_moments <- plot_genewise_moments(data_adjusted, batch, robust=FALSE)

BatchQC documentation built on Nov. 8, 2020, 8:30 p.m.