BayesPeak: Bayesian Analysis of ChIP-seq Data

This package is an implementation of the BayesPeak algorithm for peak-calling in ChIP-seq data.

AuthorChristiana Spyrou, Jonathan Cairns, Rory Stark, Andy Lynch, Simon Tavar\\'{e},
Date of publicationNone
MaintainerJonathan Cairns <jonathan.cairns@babraham.ac.uk>
LicenseGPL (>= 2)
Version1.26.0

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Files

BayesPeak/DESCRIPTION
BayesPeak/NAMESPACE
BayesPeak/R
BayesPeak/R/bayespeak.R BayesPeak/R/overfitting.R BayesPeak/R/visuals.R
BayesPeak/build
BayesPeak/build/vignette.rds
BayesPeak/data
BayesPeak/data/datalist
BayesPeak/data/raw.output.H3K4me3.rda
BayesPeak/data/raw.output.rda
BayesPeak/inst
BayesPeak/inst/CITATION
BayesPeak/inst/doc
BayesPeak/inst/doc/BayesPeak.R
BayesPeak/inst/doc/BayesPeak.Rnw
BayesPeak/inst/doc/BayesPeak.pdf
BayesPeak/inst/extdata
BayesPeak/inst/extdata/H3K4me3reduced.bed
BayesPeak/inst/extdata/Inputreduced.bed
BayesPeak/man
BayesPeak/man/bayespeak.Rd BayesPeak/man/overfitting.Rd BayesPeak/man/plot.PP.Rd BayesPeak/man/plot.bed.Rd BayesPeak/man/plot.job.Rd BayesPeak/man/raw.output.H3K4me3.Rd BayesPeak/man/raw.output.Rd BayesPeak/man/read.bed.Rd BayesPeak/man/summarise.peaks.Rd
BayesPeak/src
BayesPeak/src/bayespeak.c
BayesPeak/src/bayespeak_gsl.h
BayesPeak/vignettes
BayesPeak/vignettes/BayesPeak.Rnw
BayesPeak/vignettes/BayesPeak.bib
BayesPeak/vignettes/OF.png
BayesPeak/vignettes/changelog.txt
BayesPeak/vignettes/regionOFdiag.pdf

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.