Man pages for BgeeDB
Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities Enrichment Analysis tool for UBERON ontology
| Bgee-class | Bgee Reference Class |
| deleteLocalData | Delete local database for the species of the reference class... |
| deleteOldData | Delete .rds data of one species coming from an old version of... |
| formatData | Format RNA-seq or Affymetrix data downloaded from Bgee. |
| geneList | Example of gene list object used to run a topAnat enrichment... |
| getAnnotation | Retrieve Bgee experiments annotation for targeted species and... |
| getData | Retrieve Bgee RNA-seq or Affymetrix data. |
| listBgeeRelease | List Bgee releases available to use with BgeeDB package |
| listBgeeSpecies | List species in the Bgee database and the available data... |
| loadTopAnatData | Retrieve data from Bgee to perform GO-like enrichment of... |
| makeTable | Formats results of the enrichment test on anatomical... |
| topAnat | Produces an object allowing to perform GO-like enrichment of... |
