Man pages for BiGGR
Constraint based modeling in R using metabolic reconstruction databases
| BiGGR-internal | Internal BiGGR functions and objects |
| BiGGR-package | Creates an interface to the BiGG database, provides a... |
| buildSBMLFromBiGG | Build an SBML model from a given reactions file obtained from... |
| buildSBMLFromGenes | Build an SBML model for specific genes in a given database |
| buildSBMLFromPathways | Build an SBML model for specific pathway(s) in a given... |
| buildSBMLFromReactionIDs | Build an SBML model for specific reactions in a given... |
| createLIMFromBiGG | Create a LIM model object from a BiGG database file |
| createLIMFromSBML | Create a LIM model object from an SBML file |
| E.coli_iAF1260 | Ecoli dataset with ORFs and thermodynamic information |
| E.coli_iJR904 | Ecoli genome-scale model |
| E.coli_textbook | Ecoli dataset from the BiGG database |
| extractGeneAssociations | Extract informations on genes from a given database |
| extractPathways | Extract all pathways from given database |
| getPathwaysForSBML | Extract all pathways from a database that are relevant for a... |
| getRates | Get Optimized Rates |
| Glycolysis | Metabolic reconstruction of Glycolysis pathway |
| gprMapping | GPR mapping |
| gprMappingAvg | GPR mapping ignoring AND & OR operators |
| H.pylori_ilT341 | H.pylori in silico genome-scale characterization of single... |
| H.sapiens_Recon1 | Reconstruction of human metabolism from the BiGG database |
| lying.tunell.data | Dataset of in vivo cerebral metabolite uptake and release... |
| M.barkeri_iAF692 | Metabolic reconstruction of M.barkeri from the BiGG database |
| M.tuberculosis_iNJ661 | Metabolic reconstruction of M.tuberculosis from the BiGG... |
| P.putida_iJN746 | Metabolic reconstruction of P.putida from the BiGG database |
| Recon2 | Human metabolic reconstruction Recon2 |
| rmvSpliceVariant | Remove splicing variants from the database. |
| sampleFluxEnsemble | Sample a posterior ensemble of feasible flux configurations... |
| S.aureus_iSB619 | Metabolic reconstruction of S.aureus from the BiGG database |
| sbml2hyperdraw | Returns a graph representation of an SBML model |
| S.cerevisiae_iND750 | Metabolic reconstruction of S.cerevisiae from the BiGG... |
