getRates: Get Optimized Rates
In BiGGR: Constraint based modeling in R using metabolic reconstruction databases
Description
Usage
Arguments
Value
Author(s)
Examples
Description
getRates takes the model file as the argument and based on the description of the model file generates flux values for "minimum" or "maximum" reaction rates
Usage
1
getRates(modelFile)
Arguments
modelFile
The path to a LIM model file as generated for
instance from the functions createLIMFromBiGG or createLIMFromSBML
Value
The value returned is one dimentional numeric vector of flux rates for each reaction
Author(s)
Anand K. Gavai <anand.gavai@bioinformatics.nl>
Examples
1
2
3
data("Glycolysis")
rates <-getRates(Glycolysis)
rates
BiGGR documentation built on Nov. 8, 2020, 5:38 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
getRates takes the model file as the argument and based on the description of the model file generates flux values for "minimum" or "maximum" reaction rates
Usage
1 | getRates(modelFile)
|
Arguments
modelFile |
The path to a LIM model file as generated for
instance from the functions |
Value
The value returned is one dimentional numeric vector of flux rates for each reaction
Author(s)
Anand K. Gavai <anand.gavai@bioinformatics.nl>
Examples
1 2 3 | data("Glycolysis")
rates <-getRates(Glycolysis)
rates
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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