Extracts all pathway information from an rsbml document containing a metabolic reconstruction database (e.g. Recon2). The pathway information is parsed from the "<notes>" tag of each reaction.
an object of class
list with length being the number of reactions
in the database passed as argument each entry containing a
character with the pathway
information and the reaction IDs as names. For reactions without
pathway annotation, the list will contain
If the reactions in the database document provided in the argument
database do not contain any "<notes>" with tags with pathway information
indicated by the string "SUBSYSTEM", no pathway information can be extracted.
Anand Gavai, Hannes Hettling
Thiele, I. et al. Nat Biotech, 2013
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