R/AllGenerics.R

In BioCor: Functional similarities

#' @export pathSim
setGeneric("pathSim", function(pathway1, pathway2, info, ...)
      standardGeneric("pathSim")
  )

#' @export mpathSim
setGeneric("mpathSim", function(pathways, info, method, ...)
      standardGeneric("mpathSim")
  )

#' @export geneSim
setGeneric("geneSim", function(gene1, gene2, info, method, ...)
      standardGeneric("geneSim")
  )

#' @export mgeneSim
setGeneric("mgeneSim", function(genes, info, method, ....)
      standardGeneric("mgeneSim")
  )

#' @export clusterSim
setGeneric("clusterSim", function(cluster1, cluster2, info, method, ...)
      standardGeneric("clusterSim")
  )

#' @export mclusterSim
setGeneric("mclusterSim", function(clusters, info, method, ....)
      standardGeneric("mclusterSim")
  )

#' @export clusterGeneSim
setGeneric("clusterGeneSim", function(cluster1, cluster2, info, method, ...)
      standardGeneric("clusterGeneSim")
  )

#' @export mclusterGeneSim
setGeneric("mclusterGeneSim", function(clusters, info, method, ....)
      standardGeneric("mclusterGeneSim")
  )