extrProtCTriad: Conjoint Triad Descriptor

In BioMedR: Generating Various Molecular Representations for Chemicals, Proteins, DNAs/RNAs and Their Interactions

Description

Conjoint Triad Descriptor

Usage

extrProtCTriad(x)

Arguments

x	A character vector, as the input protein sequence.

Details

This function calculates the Conjoint Triad descriptor (Dim: 343).

Value

A length 343 named vector

Author(s)

Min-feng Zhu <[e-mail]>, Nan Xiao <http://r2s.name>

References

J.W. Shen, J. Zhang, X.M. Luo, W.L. Zhu, K.Q. Yu, K.X. Chen, Y.X. Li, H.L. Jiang. Predicting Protein-protein Interactions Based Only on Sequences Information. Proceedings of the National Academy of Sciences. 007, 104, 4337–4341.

Examples

x = readFASTA(system.file('protseq/P00750.fasta', package = 'BioMedR'))[[1]]
extrProtCTriad(x)

BioMedR documentation built on Nov. 17, 2017, 10:08 a.m.