extrProtTC: Tripeptide Composition Descriptor

In BioMedR: Generating Various Molecular Representations for Chemicals, Proteins, DNAs/RNAs and Their Interactions

Description

Tripeptide Composition Descriptor

Usage

extrProtTC(x)

Arguments

x	A character vector, as the input protein sequence.

Details

This function calculates the Tripeptide Composition descriptor (Dim: 8000).

Value

A length 8000 named vector

Author(s)

Min-feng Zhu <[e-mail]>, Nan Xiao <http://r2s.name>

References

M. Bhasin, G. P. S. Raghava. Classification of Nuclear Receptors Based on Amino Acid Composition and Dipeptide Composition. Journal of Biological Chemistry, 2004, 279, 23262.

See Also

See extrProtDC for dipeptide composition descriptors.

Examples

x = readFASTA(system.file('protseq/P00750.fasta', package = 'BioMedR'))[[1]]
extrProtTC(x)

BioMedR documentation built on Nov. 17, 2017, 10:08 a.m.