BioSeqClass: Classification for Biological Sequences

Extracting Features from Biological Sequences and Building Classification Model

Author
Li Hong sysptm@gmail.com
Date of publication
None
Maintainer
Li Hong <sysptm@gmail.com>
License
LGPL (>= 2.0)
Version
1.32.0

View on Bioconductor

Man pages

basic
Assistant Functions
classify
Classification with Specific Features and Cross-Validation
featureAAindex
Feature Coding by physicochemical/biochemical properties in...
featureBDNAVIDEO
Feature Coding by DNA/RNA property
featureBinary
Feature Coding by Binary Vectors
featureCKSAAP
Feature Coding by k-spaced Aminoacids/Base Pairs
featureCTD
Feature Coding by composition, transition and distribution
featureDIPRODB
Feature Coding by Dinucleotide Property
featureDOMAIN
Feature Coding by doamin organization
featureEvaluate
Evaluate Different Feature Coding Schemas
featureFragmentComposition
Feature Coding by the composition of k-mer fragments
featureGapPairComposition
Feature Coding by g-spaced aminoacids/bases pairs
featureHydro
Feature Coding by hydrophobicity
featurePseudoAAComp
Feature Coding by Pseudo Amino Acid Composiion
featurePSSM
Feature Coding
featureSSC
Feature Coding by secondary structure
hr
Homolog Reduction
model
Classification Models
performance
Performance Evaluation
selectFFS
feature forward selection
selectWeka
Feature Selection by Weka
zzz
Load packages and data

Files in this package

BioSeqClass/DESCRIPTION
BioSeqClass/NAMESPACE
BioSeqClass/R
BioSeqClass/R/basic.R
BioSeqClass/R/classify.R
BioSeqClass/R/feature.R
BioSeqClass/R/featureEvaluate.R
BioSeqClass/R/hr.R
BioSeqClass/R/model.R
BioSeqClass/R/performance.R
BioSeqClass/R/selectFFS.R
BioSeqClass/R/selectWeka.R
BioSeqClass/R/zzz.R
BioSeqClass/build
BioSeqClass/build/vignette.rds
BioSeqClass/data
BioSeqClass/data/DiProDB.rda
BioSeqClass/data/PROPERTY.rda
BioSeqClass/data/aa.index.rda
BioSeqClass/data/datalist
BioSeqClass/data/dssp.ss.rda
BioSeqClass/inst
BioSeqClass/inst/doc
BioSeqClass/inst/doc/BioSeqClass.R
BioSeqClass/inst/doc/BioSeqClass.Rnw
BioSeqClass/inst/doc/BioSeqClass.pdf
BioSeqClass/inst/example
BioSeqClass/inst/example/acetylation_K.fasta
BioSeqClass/inst/example/acetylation_K.neg40.pep
BioSeqClass/inst/example/acetylation_K.pos40.pep
BioSeqClass/inst/example/acetylation_K.site
BioSeqClass/inst/example/test.rna
BioSeqClass/inst/scripts
BioSeqClass/inst/scripts/BioSeqClass.R
BioSeqClass/inst/scripts/asap
BioSeqClass/inst/scripts/hmmpfam
BioSeqClass/inst/scripts/homologReduction_cdhit
BioSeqClass/inst/scripts/jnet
BioSeqClass/inst/scripts/proteus2
BioSeqClass/inst/scripts/psipred
BioSeqClass/inst/scripts/weka.jar
BioSeqClass/man
BioSeqClass/man/basic.Rd
BioSeqClass/man/classify.Rd
BioSeqClass/man/featureAAindex.Rd
BioSeqClass/man/featureBDNAVIDEO.Rd
BioSeqClass/man/featureBinary.Rd
BioSeqClass/man/featureCKSAAP.Rd
BioSeqClass/man/featureCTD.Rd
BioSeqClass/man/featureDIPRODB.Rd
BioSeqClass/man/featureDOMAIN.Rd
BioSeqClass/man/featureEvaluate.Rd
BioSeqClass/man/featureFragmentComposition.Rd
BioSeqClass/man/featureGapPairComposition.Rd
BioSeqClass/man/featureHydro.Rd
BioSeqClass/man/featurePSSM.Rd
BioSeqClass/man/featurePseudoAAComp.Rd
BioSeqClass/man/featureSSC.Rd
BioSeqClass/man/hr.Rd
BioSeqClass/man/model.Rd
BioSeqClass/man/performance.Rd
BioSeqClass/man/selectFFS.Rd
BioSeqClass/man/selectWeka.Rd
BioSeqClass/man/zzz.Rd
BioSeqClass/vignettes
BioSeqClass/vignettes/BioSeqClass.Rnw
BioSeqClass/vignettes/BioSeqClass.bib
BioSeqClass/vignettes/FeatureSets16.pdf
BioSeqClass/vignettes/cvFFSClassify0005.pdf
BioSeqClass/vignettes/workflow.pdf