BioSeqClass: Classification for Biological Sequences

Extracting Features from Biological Sequences and Building Classification Model

AuthorLi Hong sysptm@gmail.com
Date of publicationNone
MaintainerLi Hong <sysptm@gmail.com>
LicenseLGPL (>= 2.0)
Version1.32.0

View on Bioconductor

Functions

aaClass Man page
aa.index Man page
aligndisHR Man page
basic Man page
.callPerl Man page
cdhitHR Man page
classify Man page
classifyModelBAG Man page
classifyModelCTREE Man page
classifyModelCTREELIBSVM Man page
classifyModelKNN Man page
classifyModelLIBSVM Man page
classifyModelNB Man page
classifyModelNNET Man page
classifyModelRF Man page
classifyModelRPART Man page
classifyModelSVMLIGHT Man page
classifyModelTree Man page
DiProDB Man page
distance Man page
dssp.ss Man page
elements Man page
featureAAindex Man page
featureACF Man page
featureACH Man page
featureACI Man page
featureBDNAVIDEO Man page
featureBinary Man page
featureCKSAAP Man page
featureCTD Man page
featureDIPRODB Man page
featureDOMAIN Man page
featureEvaluate Man page
featureFragmentComposition Man page
featureGapPairComposition Man page
featureHydro Man page
featurePseudoAAComp Man page
featurePSSM Man page
featureSSC Man page
getDSSP Man page
getNegSite Man page
getTrain Man page
hr Man page
model Man page
.onLoad Man page
.pathPerl Man page
performance Man page
predictPFAM Man page
predictPROTEUS Man page
PROPERTY Man page
pwm Man page
selectFFS Man page
selectWeka Man page
sub.seq Man page

Files

BioSeqClass/DESCRIPTION
BioSeqClass/NAMESPACE
BioSeqClass/R
BioSeqClass/R/basic.R
BioSeqClass/R/classify.R
BioSeqClass/R/feature.R
BioSeqClass/R/featureEvaluate.R
BioSeqClass/R/hr.R
BioSeqClass/R/model.R BioSeqClass/R/performance.R BioSeqClass/R/selectFFS.R BioSeqClass/R/selectWeka.R BioSeqClass/R/zzz.R
BioSeqClass/build
BioSeqClass/build/vignette.rds
BioSeqClass/data
BioSeqClass/data/DiProDB.rda
BioSeqClass/data/PROPERTY.rda
BioSeqClass/data/aa.index.rda
BioSeqClass/data/datalist
BioSeqClass/data/dssp.ss.rda
BioSeqClass/inst
BioSeqClass/inst/doc
BioSeqClass/inst/doc/BioSeqClass.R
BioSeqClass/inst/doc/BioSeqClass.Rnw
BioSeqClass/inst/doc/BioSeqClass.pdf
BioSeqClass/inst/example
BioSeqClass/inst/example/acetylation_K.fasta
BioSeqClass/inst/example/acetylation_K.neg40.pep
BioSeqClass/inst/example/acetylation_K.pos40.pep
BioSeqClass/inst/example/acetylation_K.site
BioSeqClass/inst/example/test.rna
BioSeqClass/inst/scripts
BioSeqClass/inst/scripts/BioSeqClass.R
BioSeqClass/inst/scripts/asap
BioSeqClass/inst/scripts/hmmpfam
BioSeqClass/inst/scripts/homologReduction_cdhit
BioSeqClass/inst/scripts/jnet
BioSeqClass/inst/scripts/proteus2
BioSeqClass/inst/scripts/psipred
BioSeqClass/inst/scripts/weka.jar
BioSeqClass/man
BioSeqClass/man/basic.Rd BioSeqClass/man/classify.Rd BioSeqClass/man/featureAAindex.Rd BioSeqClass/man/featureBDNAVIDEO.Rd BioSeqClass/man/featureBinary.Rd BioSeqClass/man/featureCKSAAP.Rd BioSeqClass/man/featureCTD.Rd BioSeqClass/man/featureDIPRODB.Rd BioSeqClass/man/featureDOMAIN.Rd BioSeqClass/man/featureEvaluate.Rd BioSeqClass/man/featureFragmentComposition.Rd BioSeqClass/man/featureGapPairComposition.Rd BioSeqClass/man/featureHydro.Rd BioSeqClass/man/featurePSSM.Rd BioSeqClass/man/featurePseudoAAComp.Rd BioSeqClass/man/featureSSC.Rd BioSeqClass/man/hr.Rd BioSeqClass/man/model.Rd BioSeqClass/man/performance.Rd BioSeqClass/man/selectFFS.Rd BioSeqClass/man/selectWeka.Rd BioSeqClass/man/zzz.Rd
BioSeqClass/vignettes
BioSeqClass/vignettes/BioSeqClass.Rnw
BioSeqClass/vignettes/BioSeqClass.bib
BioSeqClass/vignettes/FeatureSets16.pdf
BioSeqClass/vignettes/cvFFSClassify0005.pdf
BioSeqClass/vignettes/workflow.pdf

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.