R packages for compliance with Bioconductor package guidelines
and best practices. Divides output into three categories:
ERROR, WARNING, and NOTE.
See the vignette for more details. Not meant to replace
R CMD check, which should always be run first.
A directory or tarball (.tar.gz file) containing an R source package.
BiocCheck() analyzes R packages for compliance with
Bioconductor package guidelines and best practices. For
the rationale behind these guidelines and best practices,
see the vignette and pages in the
usage() displays the options that can be passed
BiocCheck is called within R with
package is a directory or .tar.gz file containing
R source package.
BiocCheck is not meant as a replacement for
R CMD check, which should always be run first
for best results.
See the vignette for detailed explanations of all
the checks performed by
Mostly called for the side effect of the information displayed. When called interactively, returns a list with three components:
Items that must be fixed before the package can be accepted into Bioconductor.
We strongly suggest fixing these items.
Fixing these items is not required, there is no expectation that considerations will escalate in severity.
Dan Tenenbaum and Lori Shepherd
http://www.bioconductor.org/developers/how-to/coding-style/ http://www.bioconductor.org/developers/package-guidelines/ http://www.bioconductor.org/developers/how-to/version-numbering/ http://www.bioconductor.org/developers/how-to/unitTesting-guidelines/
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