API for BiocCheck
Bioconductor-specific package checks

Global functions
.BiocCheckFromCommandLine Source code
.BiocCheckGitCloneFromCommandLine Source code
.checkEnv Source code
.colonWalker Source code
.debug Source code
.get_package_dir Source code
.get_package_name Source code
.installScript Source code
.isScriptInstalled Source code
.msg Source code
.onLoad Source code
.printf Source code
.stop Source code
.verbatim Source code
.zeroCounters Source code
BiocCheck Man page Source code
BiocCheckGitClone Man page Source code
Context Source code
check1toN Source code
checkBBScompatibility Source code
checkBadFiles Source code
checkBiocViews Source code
checkClassEqUsage Source code
checkCodingPractice Source code
checkDeprecatedPackages Source code
checkDescription Source code
checkDescriptionNamespaceConsistency Source code
checkExportsAreDocumented Source code
checkForBadDepends Source code
checkForBiocDevelSubscription Source code
checkForDirectSlotAccess Source code
checkForLibraryMe Source code
checkForPromptComments Source code
checkForSupportSiteRegistration Source code
checkForValueSection Source code
checkForVersionNumberMismatch Source code
checkFormatting Source code
checkFunctionLengths Source code
checkImportSuggestions Source code
checkIndivFileSizes Source code
checkInstContents Source code
checkIsPackageAlreadyInRepo Source code
checkIsVignetteBuilt Source code
checkLibraryCalls Source code
checkLogicalUseFiles Source code
checkManDocumentation Source code
checkNEWS Source code
checkNewPackageVersionNumber Source code
checkPackageSize Source code
checkRVersionDependency Source code
checkRemotesUsage Source code
checkSapply Source code
checkSkipOnBioc Source code
checkSystemCall Source code
checkUnitTests Source code
checkUsageOfDont Source code
checkVersionNumber Source code
checkVigBiocInst Source code
checkVigBuilder Source code
checkVigChunkEval Source code
checkVigDirExists Source code
checkVigEngine Source code
checkVigEvalAllFalse Source code
checkVigFiles Source code
checkVigMetadata Source code
checkVigSuggests Source code
checkVigTemplate Source code
checkVignetteDir Source code
cleanupDependency Source code
docType Source code
doesFileLoadPackage Source code
doesManPageHaveRunnableExample Source code
findLogicalFile Source code
findLogicalRdir Source code
findSymbolInParsedCode Source code
getAllDependencies Source code
getAllDeprecatedPkgs Source code
getArgParser Source code
getArgParser2 Source code
getBadDeps Source code
getFunctionLengths Source code
getMaintainerEmail Source code
getOptionList Source code
getOptionList2 Source code
getParent Source code
getPkgType Source code
getVigBuilder Source code
getVigEngine Source code
getVigSources Source code
grepPkgDir Source code
handleCheck Source code
handleContext Source code
handleError Source code
handleMessage Source code
handleNote Source code
handleVerbatim Source code
handleWarning Source code
installAndLoad Source code
isInfrastructurePackage Source code
makeTempRFile Source code
mungeName Source code
parseFile Source code
parseFiles Source code
safeFindGlobals Source code
usage Man page Source code
usage2 Man page Source code
vigHelper Source code
BiocCheck documentation built on April 29, 2020, 5:52 a.m.