BiocNeighbors
Nearest Neighbor Detection for Bioconductor Packages

Package index
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Vignettes
Functions
237
Source code
58
Man pages
29
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BiocNeighbors: Nearest Neighbor Detection for Bioconductor Packages
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API

API for BiocNeighbors
Nearest Neighbor Detection for Bioconductor Packages

Global functions
.BUILDINDEX_GENERATOR Source code
.FINDKNN_GENERATOR Source code
.FINDKNN_GENERATOR_NOX Source code
.FINDNEIGHBORS_GENERATOR Source code
.FINDNEIGHBORS_GENERATOR_NOX Source code
.QUERYKNN_GENERATOR Source code
.QUERYKNN_GENERATOR_NOX Source code
.QUERYNEIGHBORS_GENERATOR Source code
.QUERYNEIGHBORS_GENERATOR_NOX Source code
.combine_lists Source code
.combine_matrices Source code
.default_param Source code
.define_thresholds Source code
.find_annoy_args Source code
.find_exhaustive_args Source code
.find_hnsw_args Source code
.find_kmknn_args Source code
.find_vptree_args Source code
.form_range_output Source code
.order_to_index Source code
.refine_k Source code
.setup_indices Source code
.setup_precluster Source code
.setup_query Source code
.split_matrix_for_workers Source code
.subset_to_index Source code
.template_find_knn Source code
.template_query_knn Source code
.template_range_find_exact Source code
.template_range_query_exact Source code
AnnoyIndex Man page Source code
AnnoyIndex-class Man page
AnnoyIndex_path Man page Source code
AnnoyIndex_search_mult Man page Source code
AnnoyParam Man page Source code
AnnoyParam-class Man page
AnnoyParam_directory Man page Source code
AnnoyParam_ntrees Man page Source code
AnnoyParam_search_mult Man page Source code
BiocNeighborIndex-class Man page
BiocNeighborParam-class Man page
BiocNeighbors-algorithms Man page
BiocNeighbors-raw-index Man page
BiocNeighbors-ties Man page
ExhaustiveIndex Man page Source code
ExhaustiveIndex-class Man page
ExhaustiveParam Man page Source code
ExhaustiveParam-class Man page
HnswIndex Man page Source code
HnswIndex-class Man page
HnswIndex_ef_search Man page Source code
HnswIndex_path Man page Source code
HnswParam Man page Source code
HnswParam-class Man page
HnswParam_directory Man page Source code
HnswParam_ef_construction Man page Source code
HnswParam_ef_search Man page Source code
HnswParam_nlinks Man page Source code
KmknnIndex Man page Source code
KmknnIndex-class Man page
KmknnIndex_cluster_centers Man page Source code
KmknnIndex_cluster_info Man page Source code
KmknnParam Man page Source code
KmknnParam-class Man page
KmknnParam_kmeans_args Man page Source code
VptreeIndex Man page Source code
VptreeIndex-class Man page
VptreeIndex_nodes Man page Source code
VptreeParam Man page Source code
VptreeParam-class Man page
bndata Man page
bndata,BiocNeighborIndex-method Man page
bndistance Man page
bndistance,BiocNeighborIndex-method Man page
bndistance,BiocNeighborParam-method Man page
bnorder Man page
bnorder,AnnoyIndex-method Man page
bnorder,ExhaustiveIndex-method Man page
bnorder,HnswIndex-method Man page
bnorder,KmknnIndex-method Man page
bnorder,VptreeIndex-method Man page
buildAnnoy Man page Source code
buildExhaustive Man page Source code
buildHnsw Man page Source code
buildIndex Man page
buildIndex,AnnoyParam-method Man page
buildIndex,HnswParam-method Man page
buildIndex,KmknnParam-method Man page
buildIndex,VptreeParam-method Man page
buildIndex,missing-method Man page
buildKmknn Man page Source code
buildVptree Man page Source code
build_annoy Source code
build_hnsw Source code
build_vptree Source code
dim,BiocNeighborIndex-method Man page
dimnames,BiocNeighborIndex-method Man page
findAnnoy Man page Source code
findExhaustive Man page Source code
findHnsw Man page Source code
findKNN Man page
findKNN,AnnoyIndex,AnnoyParam-method Man page
findKNN,AnnoyIndex,missing-method Man page
findKNN,ExhaustiveIndex,ExhaustiveParam-method Man page
findKNN,ExhaustiveIndex,missing-method Man page
findKNN,HnswIndex,HnswParam-method Man page
findKNN,HnswIndex,missing-method Man page
findKNN,KmknnIndex,KmknnParam-method Man page
findKNN,KmknnIndex,missing-method Man page
findKNN,VptreeIndex,VptreeParam-method Man page
findKNN,VptreeIndex,missing-method Man page
findKNN,missing,AnnoyParam-method Man page
findKNN,missing,ExhaustiveParam-method Man page
findKNN,missing,HnswParam-method Man page
findKNN,missing,KmknnParam-method Man page
findKNN,missing,VptreeParam-method Man page
findKNN,missing,missing-method Man page
findKNN-methods Man page
findKmknn Man page Source code
findNeighbors Man page
findNeighbors,KmknnIndex,KmknnParam-method Man page
findNeighbors,KmknnIndex,missing-method Man page
findNeighbors,VptreeIndex,VptreeParam-method Man page
findNeighbors,VptreeIndex,missing-method Man page
findNeighbors,missing,KmknnParam-method Man page
findNeighbors,missing,VptreeParam-method Man page
findNeighbors,missing,missing-method Man page
findVptree Man page Source code
find_annoy Source code
find_exhaustive Source code
find_hnsw Source code
find_kmknn Source code
find_vptree Source code
queryAnnoy Man page Source code
queryExhaustive Man page Source code
queryHnsw Man page Source code
queryKNN Man page
queryKNN,AnnoyIndex,AnnoyParam-method Man page
queryKNN,AnnoyIndex,missing-method Man page
queryKNN,ExhaustiveIndex,ExhaustiveParam-method Man page
queryKNN,ExhaustiveIndex,missing-method Man page
queryKNN,HnswIndex,HnswParam-method Man page
queryKNN,HnswIndex,missing-method Man page
queryKNN,KmknnIndex,KmknnParam-method Man page
queryKNN,KmknnIndex,missing-method Man page
queryKNN,VptreeIndex,VptreeParam-method Man page
queryKNN,VptreeIndex,missing-method Man page
queryKNN,missing,AnnoyParam-method Man page
queryKNN,missing,ExhaustiveParam-method Man page
queryKNN,missing,HnswParam-method Man page
queryKNN,missing,KmknnParam-method Man page
queryKNN,missing,VptreeParam-method Man page
queryKNN,missing,missing-method Man page
queryKNN-methods Man page
queryKmknn Man page Source code
queryNeighbors Man page
queryNeighbors,KmknnIndex,KmknnParam-method Man page
queryNeighbors,KmknnIndex,missing-method Man page
queryNeighbors,VptreeIndex,VptreeParam-method Man page
queryNeighbors,VptreeIndex,missing-method Man page
queryNeighbors,missing,KmknnParam-method Man page
queryNeighbors,missing,VptreeParam-method Man page
queryNeighbors,missing,missing-method Man page
queryVptree Man page Source code
query_annoy Source code
query_exhaustive Source code
query_hnsw Source code
query_kmknn Source code
query_vptree Source code
rangeFind-methods Man page
rangeFindExhaustive Man page Source code
rangeFindKmknn Man page Source code
rangeFindVptree Man page Source code
rangeQuery-methods Man page
rangeQueryExhaustive Man page Source code
rangeQueryKmknn Man page Source code
rangeQueryVptree Man page Source code
range_find_exhaustive Source code
range_find_kmknn Source code
range_find_vptree Source code
range_query_exhaustive Source code
range_query_kmknn Source code
range_query_vptree Source code
show,AnnoyIndex-method Man page
show,AnnoyParam-method Man page
show,BiocNeighborIndex-method Man page
show,BiocNeighborParam-method Man page
show,HnswIndex-method Man page
show,HnswParam-method Man page
show,KmknnIndex-method Man page
show,KmknnParam-method Man page
BiocNeighbors documentation built on Dec. 9, 2020, 2:01 a.m.

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