BiocStyle: Standard styles for vignettes and other Bioconductor documents

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Provides standard formatting styles for Bioconductor PDF and HTML documents. Package vignettes illustrate use and functionality.

Author
Andrzej OleĊ›, Martin Morgan, Wolfgang Huber
Date of publication
None
Maintainer
Bioconductor Package Maintainer <maintainer@bioconductor.org>
License
Artistic-2.0
Version
2.2.1
URLs

View on Bioconductor

Man pages

helpers
Specify Rmarkdown document metadata
html_document
Use Bioconductor style to format R Markdown HTML output
latex
Use Bioconductor styles to format LaTeX vignettes
latex2
Use Bioconductor styles to format LaTeX vignettes
macros
Link to packages on Bioconductor, CRAN and GitHub
markdown
Use Bioconductor CSS style to format HTML vignettes
md_document
Enable BiocStyle macros and a hyperlinked TOC in markdown...
output
Output format of an R Markdown document
pdf_document
Use Bioconductor style to format R Markdown PDF output

Files in this package

BiocStyle/DESCRIPTION
BiocStyle/NAMESPACE
BiocStyle/NEWS
BiocStyle/R
BiocStyle/R/auth_affil.R
BiocStyle/R/html_document.R
BiocStyle/R/html_document2.R
BiocStyle/R/latex.R
BiocStyle/R/latex2.R
BiocStyle/R/markdown.R
BiocStyle/R/md_document.R
BiocStyle/R/pdf_document.R
BiocStyle/R/pdf_document2.R
BiocStyle/R/utils.R
BiocStyle/R/zzz.R
BiocStyle/build
BiocStyle/build/vignette.rds
BiocStyle/inst
BiocStyle/inst/doc
BiocStyle/inst/doc/HtmlStyle.R
BiocStyle/inst/doc/HtmlStyle.Rmd
BiocStyle/inst/doc/HtmlStyle.html
BiocStyle/inst/doc/LatexStyle.R
BiocStyle/inst/doc/LatexStyle.Rnw
BiocStyle/inst/doc/LatexStyle.pdf
BiocStyle/inst/doc/LatexStyle2.R
BiocStyle/inst/doc/LatexStyle2.Rnw
BiocStyle/inst/doc/LatexStyle2.pdf
BiocStyle/inst/resources
BiocStyle/inst/resources/html
BiocStyle/inst/resources/html/bioconductor.css
BiocStyle/inst/resources/html/bioconductor2.css
BiocStyle/inst/resources/html/codefolding.js
BiocStyle/inst/resources/html/setDocumentTitleClass.js
BiocStyle/inst/resources/html/setExternalLinksTarget.js
BiocStyle/inst/resources/html/template.html
BiocStyle/inst/resources/md
BiocStyle/inst/resources/md/toc.template
BiocStyle/inst/resources/tex
BiocStyle/inst/resources/tex/Bioconductor.sty
BiocStyle/inst/resources/tex/Bioconductor2.sty
BiocStyle/inst/resources/tex/highlighting-macros.def
BiocStyle/inst/resources/tex/template.tex
BiocStyle/inst/resources/tex/template2.tex
BiocStyle/inst/resources/tex/unsrturl.bst
BiocStyle/inst/rmarkdown
BiocStyle/inst/rmarkdown/templates
BiocStyle/inst/rmarkdown/templates/html_document
BiocStyle/inst/rmarkdown/templates/html_document/skeleton
BiocStyle/inst/rmarkdown/templates/html_document/skeleton/skeleton.Rmd
BiocStyle/inst/rmarkdown/templates/html_document/template.yaml
BiocStyle/inst/rmarkdown/templates/pdf_document
BiocStyle/inst/rmarkdown/templates/pdf_document/skeleton
BiocStyle/inst/rmarkdown/templates/pdf_document/skeleton/skeleton.Rmd
BiocStyle/inst/rmarkdown/templates/pdf_document/template.yaml
BiocStyle/inst/rmarkdown/templates/pdf_document2
BiocStyle/inst/rmarkdown/templates/pdf_document2/skeleton
BiocStyle/inst/rmarkdown/templates/pdf_document2/skeleton/skeleton.Rmd
BiocStyle/inst/rmarkdown/templates/pdf_document2/template.yaml
BiocStyle/inst/themes
BiocStyle/inst/themes/default.css
BiocStyle/inst/unitTests
BiocStyle/inst/unitTests/cases
BiocStyle/inst/unitTests/cases/maketitle_test_1.Rnw
BiocStyle/inst/unitTests/cases/maketitle_test_2.Rnw
BiocStyle/inst/unitTests/cases/maketitle_test_3.Rnw
BiocStyle/inst/unitTests/cases/maketitle_test_4.Rnw
BiocStyle/inst/unitTests/cases/maketitle_test_5.Rnw
BiocStyle/inst/unitTests/test_latex.R
BiocStyle/man
BiocStyle/man/helpers.Rd
BiocStyle/man/html_document.Rd
BiocStyle/man/latex.Rd
BiocStyle/man/latex2.Rd
BiocStyle/man/macros.Rd
BiocStyle/man/markdown.Rd
BiocStyle/man/md_document.Rd
BiocStyle/man/output.Rd
BiocStyle/man/pdf_document.Rd
BiocStyle/tests
BiocStyle/tests/run_tests.R
BiocStyle/vignettes
BiocStyle/vignettes/Bioc.bib
BiocStyle/vignettes/HtmlStyle.Rmd
BiocStyle/vignettes/LatexStyle.Rnw
BiocStyle/vignettes/LatexStyle2.Rnw