BiocStyle: Standard styles for vignettes and other Bioconductor documents
Version 2.4.0

Provides standard formatting styles for Bioconductor PDF and HTML documents. Package vignettes illustrate use and functionality.

Browse man pages Browse package API and functions Browse package files

AuthorAndrzej Oleś, Martin Morgan, Wolfgang Huber
Bioconductor views Software
Date of publicationNone
MaintainerBioconductor Package Maintainer <maintainer@bioconductor.org>
LicenseArtistic-2.0
Version2.4.0
URL https://github.com/Bioconductor/BiocStyle
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("BiocStyle")

Man pages

helpers: Specify Rmarkdown document metadata
html_document: Use Bioconductor style to format R Markdown HTML output
latex: Use Bioconductor styles to format LaTeX vignettes
latex2: Use Bioconductor styles to format LaTeX vignettes
macros: Link to packages on Bioconductor, CRAN and GitHub
markdown: Use Bioconductor CSS style to format HTML vignettes
md_document: Convert to a BiocStyle markdown document
output: Output format of an R Markdown document
pdf_document: Use Bioconductor style to format R Markdown PDF output

Functions

Biocannopkg Man page Source code
Biocexptpkg Man page Source code
Biocpkg Man page Source code
CRANpkg Man page Source code
Githubpkg Man page Source code
Rpackage Man page Source code
auth_affil_html Source code
auth_affil_latex Source code
biocTempfile Source code
caption_titles Source code
copyResource Source code
create_html_template Source code
create_latex_template Source code
doc_date Man page Source code
html_document Man page Source code
html_document2 Man page Source code
knitr_options Source code
latex Man page Source code
latex2 Man page Source code
loadBioconductorStyleFile Source code
markdown Man page Source code
md_document Man page Source code
merge_lists Source code
modifyLines Source code
onLoad Source code
output Man page Source code
output_format Source code
parse_auth_affil Source code
pdf_document Man page Source code
pdf_document2 Man page Source code
pkg_ver Man page Source code
pre_processor Source code
print.file Source code
process_footnotes Source code
readUTF8 Source code
sub_ext Source code
width Source code
writeUTF8 Source code

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/auth_affil.R
R/html_document.R
R/html_document2.R
R/knitr_options.R
R/latex.R
R/latex2.R
R/markdown.R
R/md_document.R
R/pdf_document.R
R/pdf_document2.R
R/rmd_common.R
R/utils.R
R/zzz.R
build
build/vignette.rds
inst
inst/doc
inst/doc/AuthoringRmdVignettes.R
inst/doc/AuthoringRmdVignettes.Rmd
inst/doc/AuthoringRmdVignettes.html
inst/doc/HtmlStyle.R
inst/doc/HtmlStyle.Rmd
inst/doc/HtmlStyle.html
inst/doc/LatexStyle.R
inst/doc/LatexStyle.Rnw
inst/doc/LatexStyle.pdf
inst/doc/LatexStyle2.R
inst/doc/LatexStyle2.Rnw
inst/doc/LatexStyle2.pdf
inst/resources
inst/resources/html
inst/resources/html/bioconductor.css
inst/resources/html/bioconductor2.css
inst/resources/html/codefolding.js
inst/resources/html/setDocumentTitleClass.js
inst/resources/html/setExternalLinksTarget.js
inst/resources/html/template.html
inst/resources/md
inst/resources/md/toc.template
inst/resources/tex
inst/resources/tex/Bioconductor.sty
inst/resources/tex/Bioconductor2.sty
inst/resources/tex/highlighting-macros.def
inst/resources/tex/template.tex
inst/resources/tex/template2.tex
inst/resources/tex/unsrturl.bst
inst/rmarkdown
inst/rmarkdown/templates
inst/rmarkdown/templates/html_document
inst/rmarkdown/templates/html_document/skeleton
inst/rmarkdown/templates/html_document/skeleton/skeleton.Rmd
inst/rmarkdown/templates/html_document/template.yaml
inst/rmarkdown/templates/html_document2
inst/rmarkdown/templates/html_document2/skeleton
inst/rmarkdown/templates/html_document2/skeleton/skeleton.Rmd
inst/rmarkdown/templates/html_document2/template.yaml
inst/rmarkdown/templates/pdf_document
inst/rmarkdown/templates/pdf_document/skeleton
inst/rmarkdown/templates/pdf_document/skeleton/skeleton.Rmd
inst/rmarkdown/templates/pdf_document/template.yaml
inst/rmarkdown/templates/pdf_document2
inst/rmarkdown/templates/pdf_document2/skeleton
inst/rmarkdown/templates/pdf_document2/skeleton/skeleton.Rmd
inst/rmarkdown/templates/pdf_document2/template.yaml
inst/themes
inst/themes/default.css
inst/unitTests
inst/unitTests/cases
inst/unitTests/cases/maketitle_test_1.Rnw
inst/unitTests/cases/maketitle_test_2.Rnw
inst/unitTests/cases/maketitle_test_3.Rnw
inst/unitTests/cases/maketitle_test_4.Rnw
inst/unitTests/cases/maketitle_test_5.Rnw
inst/unitTests/test_latex.R
man
man/helpers.Rd
man/html_document.Rd
man/latex.Rd
man/latex2.Rd
man/macros.Rd
man/markdown.Rd
man/md_document.Rd
man/output.Rd
man/pdf_document.Rd
tests
tests/run_tests.R
vignettes
vignettes/AuthoringRmdVignettes.Rmd
vignettes/Bioc.bib
vignettes/HtmlStyle.Rmd
vignettes/LatexStyle.Rnw
vignettes/LatexStyle2.Rnw
BiocStyle documentation built on May 20, 2017, 9:23 p.m.