pdf_document: Use Bioconductor style to format R Markdown PDF output
In BiocStyle: Standard styles for vignettes and other Bioconductor documents

Description Usage Arguments Value Author(s) See Also Examples

This function sets the Bioconductor style in PDF documents rendered using R Markdown v2.

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pdf_document(toc = TRUE, number_sections = TRUE, fig_width = NA,
  fig_height = NA, includes = NULL, ..., titlecaps = TRUE,
  toc_newpage = FALSE, use_unsrturl = TRUE, relative_path = FALSE)

`toc`	logical(1), `TRUE` to include a table of contents in the output
`number_sections`	logical(1), `TRUE` to number section headings
`fig_width`	numeric(1), default width (in inches) for figures
`fig_height`	numeric(1), default width (in inches) for figures
`includes`	Named list of additional content to include within the document (typically created using the `includes` function).
`...`	Additional arguments passed to `pdf_document`.
`titlecaps`	logical(1), `TRUE` to use the emphasize the first sentence in figure and table captions as title
`toc_newpage`	logical(1), `TRUE` to start the table of contents on a new page.
`use_unsrturl`	logical(1), indicating that the ‘unsrturl’ style will be used (`\bibliographystyle` command not required).
`relative_path`	logical(1), copy supporting LaTeX files and use relative paths rather than absolute paths to system files.

R Markdown output format to pass to render.

Andrzej Oleś <andrzej.oles@embl.de>, 2014-2017

html_document, md_document

## Not run: 

# simple invocation
render("input.Rmd", BiocStyle::pdf_document())

# specify an option for latex engine
render("input.Rmd", BiocStyle::pdf_document(toc = FALSE))

## End(Not run)