BridgeDbR: Code for using BridgeDb identifier mapping framework from within R

Use BridgeDb functions and load identifier mapping databases in R

Author
Christ Leemans <christleemans@gmail.com>, Egon Willighagen <egon.willighagen@gmail.com>, Anwesha Bohler <anweshabohler@gmail.com>, Lars Eijssen <l.eijssen@maastrichtuniversity.nl>
Date of publication
None
Maintainer
Egon Willighagen <egon.willighagen@gmail.com>
License
AGPL-3
Version
1.8.0
URLs

View on Bioconductor

Man pages

BridgeDbR
BridgeDBR Package.
getBridgeNames
Method to list the BridgeDb identifier mapping file names as...
getDatabase
Downloads a identifier mapping database for the given...
getDataSource
Return a DataSource object based on either a name or system...
getFullName
Return the name of a particular data source.
getMatchingSources
Return a list of data sources of which the identifier pattern...
getOrganismCode
Return the code of a particular organism.
getSystemCode
Return the system code of a particular data source.
loadDatabase
Loads a BridgeDb identifier mapping database (.bridge file)...
map
Converts one identifier into other identifiers for the given...

Files in this package

BridgeDbR/DESCRIPTION
BridgeDbR/NAMESPACE
BridgeDbR/NEWS
BridgeDbR/R
BridgeDbR/R/bridgedb.R
BridgeDbR/R/getBridgeNames.R
BridgeDbR/R/getDataSource.R
BridgeDbR/R/getDatabase.R
BridgeDbR/R/getFullName.R
BridgeDbR/R/getMatchingSources.R
BridgeDbR/R/getOrganismCode.R
BridgeDbR/R/getSystemCode.R
BridgeDbR/R/loadDatabase.R
BridgeDbR/R/map.R
BridgeDbR/build
BridgeDbR/build/vignette.rds
BridgeDbR/inst
BridgeDbR/inst/doc
BridgeDbR/inst/doc/tutorial.R
BridgeDbR/inst/doc/tutorial.Rnw
BridgeDbR/inst/doc/tutorial.pdf
BridgeDbR/inst/java
BridgeDbR/inst/java/derby.jar
BridgeDbR/inst/java/org.bridgedb.bio.jar
BridgeDbR/inst/java/org.bridgedb.jar
BridgeDbR/inst/java/org.bridgedb.rdb.jar
BridgeDbR/man
BridgeDbR/man/BridgeDbR.Rd
BridgeDbR/man/getBridgeNames.Rd
BridgeDbR/man/getDataSource.Rd
BridgeDbR/man/getDatabase.Rd
BridgeDbR/man/getFullName.Rd
BridgeDbR/man/getMatchingSources.Rd
BridgeDbR/man/getOrganismCode.Rd
BridgeDbR/man/getSystemCode.Rd
BridgeDbR/man/loadDatabase.Rd
BridgeDbR/man/map.Rd
BridgeDbR/tests
BridgeDbR/tests/testthat
BridgeDbR/tests/testthat.R
BridgeDbR/tests/testthat/test-getDataSource.R
BridgeDbR/tests/testthat/test-getFullName.R
BridgeDbR/tests/testthat/test-getOrganismCode.R
BridgeDbR/tests/testthat/test-getSystemCode.R
BridgeDbR/vignettes
BridgeDbR/vignettes/tutorial.Rnw
BridgeDbR/vignettes/tutorial.bib