drawBubbles: drawBubbles
In BubbleTree: BubbleTree: an intuitive visualization to elucidate tumoral aneuploidy and clonality in somatic mosaicism using next generation sequencing data
Description
Usage
Arguments
Value
Examples
Description
draw the Bubbles
Usage
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drawBubbles(.Object, rbd, col = NULL)
## S4 method for signature 'BTreePlotter'
drawBubbles(.Object, rbd, col = "gray80")
Arguments
.Object
the object
rbd
the rbd object
col
the col value
Value
draw the bubbles on the track
Examples
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load(system.file("data", "allCall.lst.RData", package="BubbleTree"))
btreeplotter <- new("BTreePlotter", max.ploidy=5, max.size=10)
nn <- "sam2"
rbd1 <- allCall.lst[[nn]]@rbd
rbd2 <- allCall.lst[[nn]]@rbd.adj
arrows <- trackBTree(btreeplotter, rbd1, rbd2, min.srcSize=0.01,
min.trtSize=0.01)
btree <- drawBTree(btreeplotter, rbd1) +
drawBubbles(btreeplotter, rbd2, "gray80") + arrows
BubbleTree documentation built on Nov. 8, 2020, 8:22 p.m.
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Description Usage Arguments Value Examples
Description
draw the Bubbles
Usage
1 2 3 4 | drawBubbles(.Object, rbd, col = NULL)
## S4 method for signature 'BTreePlotter'
drawBubbles(.Object, rbd, col = "gray80")
|
Arguments
.Object |
the object |
rbd |
the rbd object |
col |
the col value |
Value
draw the bubbles on the track
Examples
1 2 3 4 5 6 7 8 9 10 | load(system.file("data", "allCall.lst.RData", package="BubbleTree"))
btreeplotter <- new("BTreePlotter", max.ploidy=5, max.size=10)
nn <- "sam2"
rbd1 <- allCall.lst[[nn]]@rbd
rbd2 <- allCall.lst[[nn]]@rbd.adj
arrows <- trackBTree(btreeplotter, rbd1, rbd2, min.srcSize=0.01,
min.trtSize=0.01)
btree <- drawBTree(btreeplotter, rbd1) +
drawBubbles(btreeplotter, rbd2, "gray80") + arrows
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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