rmapreprocess.bufferedmatrix: RMA preprocessing functions that work on BufferedMatrix...

Description Usage Arguments Value Author(s) See Also

Description

This group of functions can be used to apply the RMA background correction, Quantile normalization and Median polish summarization to data stored in a BufferedMatrix object.

Usage

1
2
3

Arguments

x

a BufferedMatrix containing data to be processed

copy

should the BufferedMatrix be copied or should the input object be changed on output

Value

In the case of normalize.BufferedMatrix.quantiles and bg.correct.BufferedMatrix a BufferedMatrix is returned. The function median.polish.summarize returns a matrix.

The function BufferedMatrix.bg.correct.normalize.quantiles carries out both pre-processing steps with a single command.

Author(s)

B. M. Bolstad bmb@bmbolstad.com

See Also

rma


BufferedMatrixMethods documentation built on Nov. 8, 2020, 8:22 p.m.