Files in CNORode

ODE add-on to CellNOptR

.travis.yml

README.md

NAMESPACE

DESCRIPTION

LICENSE

build/vignette.rds

src/sundials_iterative.c

src/getTruthTables.c

src/getStateIndex.c

src/get_count_bits.c

src/cvodes_direct.c

src/printTruthTables.c

src/CNOStructure.h

src/simulateODE.c

src/rhsODE.c

src/sundials_band.c

src/linear_transfer_function.c

src/cvodes_bandpre_impl.h

src/getNumBits.c

src/getAdjacencyMatrix.c

src/cvodea_io.c

src/cvodes_bbdpre.c

src/sundials_direct.c

src/cvodes_sptfqmr.c

src/cvodes_band.c

src/cvodes_spbcgs.c

src/sim_logic_ode.c

src/sundials_nvector.c

src/get_support_truth_tables.c

src/sundials_sptfqmr.c

src/cvodea.c

src/normHill.c

src/sundials_spbcgs.c

src/cvodes_bbdpre_impl.h

src/cvodes_spils_impl.h

src/printInterMat.c

src/printNminiTerms.c

src/sundials_spgmr.c

src/Makevars

src/cvodes_io.c

src/fnvector_serial.c

src/FG_transfer_function.c

src/sundials_dense.c

src/cvodes_dense.c

src/cvodes_spgmr.c

src/cvodes_bandpre.c

src/fnvector_serial.h

src/get_truth_tables_index.c

src/cvodes.c

src/hill_function.c

src/findStates.c

src/cvodes_spils.c

src/nvector_serial.c

src/printAdjMat.c

src/cvodes_impl.h

src/cvodes_diag.c

src/cvodes_diag_impl.h

src/get_input_index.c

src/Toy_Model_MMB_Feedback_OriginalPars_C_test.h

src/decimal2binary.c

src/getNumInputs.c

src/normHill_mod.c

src/cvodes_direct_impl.h

src/sundials_math.c

src/include/sundials/sundials_sptfqmr.h

src/include/sundials/sundials_config.h

src/include/sundials/sundials_spgmr.h

src/include/sundials/sundials_math.h

src/include/sundials/sundials_iterative.h

src/include/sundials/sundials_dense.h

src/include/sundials/sundials_nvector.h

src/include/sundials/sundials_band.h

src/include/sundials/sundials_spbcgs.h

src/include/sundials/sundials_types.h

src/include/sundials/desktop.ini

src/include/sundials/sundials_fnvector.h

src/include/sundials/sundials_lapack.h

src/include/sundials/sundials_direct.h

src/include/cvodes/cvodes_spgmr.h

src/include/cvodes/cvodes_bandpre.h

src/include/cvodes/cvodes_sptfqmr.h

src/include/cvodes/cvodes_direct.h

src/include/cvodes/cvodes_bbdpre.h

src/include/cvodes/cvodes_diag.h

src/include/cvodes/cvodes_band.h

src/include/cvodes/cvodes_spbcgs.h

src/include/cvodes/cvodes_dense.h

src/include/cvodes/cvodes.h

src/include/cvodes/cvodes_lapack.h

src/include/cvodes/desktop.ini

src/include/cvodes/cvodes_spils.h

src/include/nvector/nvector_serial.h

src/include/nvector/desktop.ini

data/CNOlist_ToyPB.RData

data/MD-ToyPB.RData

data/ToyModel.RData

data/PKN_ToyPB.RData

data/PKN-ToyPB.RData

data/ToyIndices.RData

data/ToyCNOlist.RData

R/runCNORode.R R/incidence2Adjacency.R R/getStates.R R/parEstimationLBodeGA.R R/defaultParametersGA.R R/plotLBodeModelSim.R R/parEstimationLBode.R R/simdata2cnolist.R R/getLBodeMINLPObjFunction.R R/getLBodeSimFunction.R R/getLBodeDataSim.R R/getLBodeModelSim.R R/defaultParametersSSm.R R/simulate.R R/zzz.R R/getLBodeContObjFunction.R R/createLBodeContPars.R R/minlpLBodeSSm.R R/crossvalidateODE.R R/parEstimationLBodeSSm.R R/plotLBodeFitness.R vignettes/data_ToyModelMMB_FeddbackAnd.pdf

vignettes/ToyModelMMB_FeedbackAnd.svg

vignettes/CNORode-vignette.Rnw

vignettes/comp_tex.bat

vignettes/ToyModelMMB_FeedbackAnd.png

man/getStates.Rd man/getLBodeSimFunction.Rd man/defaultParametersGA.Rd man/getLBodeMINLPObjFunction.Rd man/runCNORode.Rd man/model.Rd man/getLBodeContObjFunction.Rd man/simdata2cnolist.Rd man/CNORode-package.Rd man/getLBodeModelSim.Rd man/createLBodeContPars.Rd man/plotLBodeFitness.Rd man/simulate.Rd man/pknmodel.Rd man/cnolist.Rd man/getLBodeDataSim.Rd man/parEstimationLBodeSSm.Rd man/indices.Rd man/cnolistCNORodeExample.Rd man/parEstimationLBode.Rd man/defaultParametersSSm.Rd man/parEstimationLBodeGA.Rd man/plotLBodeModelSim.Rd man/minlpLBodeSSm.Rd man/incidence2Adjacency.Rd man/crossvalidateODE.Rd man/cnodata.Rd

inst/NEWS.Rd

inst/CITATION

inst/doc/CNORode-vignette.Rnw

inst/doc/CNORode-vignette.R inst/doc/CNORode-vignette.pdf

inst/extdata/ToyModelMMB_FeedbackAnd.sif

inst/extdata/ToyModelMMB_FeedbackAnd.csv

CNORode documentation built on Nov. 8, 2020, 7:39 p.m.