Man pages for CNORode
ODE add-on to CellNOptR

cnolistCNORodeExampleA cnolist from CellNoptR
CNORode-packageLogic based ODE extension for CellNOptR
createLBodeContParsCreate a list with ODE parameter information needed to...
defaultParametersGACreate default options to perform parameter estimation with a...
defaultParametersSSmCreate default options to perform parameter estimation with...
getLBodeContObjFunctionReturns the objective function to perform parameter...
getLBodeDataSimSimulate value signals a CNO list With Logic-Based ODEs.
getLBodeMINLPObjFunctionGet the objective function to evaluate the fitness of a given...
getLBodeModelSimSimulate the logic-based ODE model
getLBodeSimFunctionGet a function to simulate a logic based ODE model.
getStatesFind which species in the model are states.
incidence2AdjacencyConvert an incidence matrix into an adjacency matrix.
indicesIndices that relate cnolist to model
minlpLBodeSSmSearch for the best combination of continuous parameters and...
modelA model from CellNoptR
parEstimationLBodePerform parameter estimation using a genetic algorithm...
parEstimationLBodeGAPerform parameter estimation using a genetic algorithm...
parEstimationLBodeSSmPerform parameter estimation using essR.
plotLBodeFitnessPlot data against simulated values.
plotLBodeModelSimSimulate the model and plot the obtained with the different...
simdata2cnolistconverts output of getLBodeModelSim to cnolist
simulateSimulate value signals a CNO list With Logic-Based ODEs.
CNORode documentation built on May 2, 2018, 4:24 a.m.