Man pages for CNORode
ODE add-on to CellNOptR
| cnodata | A cnodata from CellNoptR |
| cnolist | A cnolist from CellNoptR |
| cnolistCNORodeExample | A cnolist from CellNoptR |
| CNORode-package | Logic based ODE extension for CellNOptR |
| createLBodeContPars | Create a list with ODE parameter information needed to... |
| crossvalidateODE | k-fold crossvalidation for ODE models. |
| defaultParametersGA | Create default options to perform parameter estimation with a... |
| defaultParametersSSm | Create default options to perform parameter estimation with... |
| getLBodeContObjFunction | Returns the objective function to perform parameter... |
| getLBodeDataSim | Simulate value signals a CNO list With Logic-Based ODEs. |
| getLBodeMINLPObjFunction | Get the objective function to evaluate the fitness of a given... |
| getLBodeModelSim | Simulate the logic-based ODE model |
| getLBodeSimFunction | Get a function to simulate a logic based ODE model. |
| getStates | Find which species in the model are states. |
| incidence2Adjacency | Convert an incidence matrix into an adjacency matrix. |
| indices | Indices that relate cnolist to model |
| minlpLBodeSSm | Search for the best combination of continuous parameters and... |
| model | A model from CellNoptR |
| parEstimationLBode | Perform parameter estimation using a genetic algorithm... |
| parEstimationLBodeGA | Perform parameter estimation using a genetic algorithm... |
| parEstimationLBodeSSm | Perform parameter estimation using essR. |
| pknmodel | A pknmodel from CellNoptR |
| plotLBodeFitness | Plot data against simulated values. |
| plotLBodeModelSim | Simulate the model and plot the obtained with the different... |
| runCNORode | runCNORode |
| simdata2cnolist | converts output of getLBodeModelSim to cnolist |
| simulate | Simulate value signals a CNO list With Logic-Based ODEs. |
