COPDSexualDimorphism: Sexual dimorphic and COPD differential analysis for gene expression and methylation.

Sexual dimoprhic and COPD differential (SDCD) analysis contrasts regression coefficients from two stratified analysis. Stratification can be done in two ways: by COPD status or by sex. For COPD-stratified analysis, SDCD analysis contrasts sexual dimorphism between cases and controls, while sex-stratified SDCD analsysis contrasts COPD differential expression pattern between males and females. The package is meant to be used in conjunction with the package limma.

Author
J Fah Sathirapongsasuti
Date of publication
None
Maintainer
J Fah Sathirapongsasuti <fah@cs.stanford.edu>
License
LGPL-2.1
Version
1.0.0

View on Bioconductor

Man pages

COPDSexualDimorphism-package
Sexual Dimorphic and COPD Differential Analysis
do.sdcd.boxplot
Represent sexual dimorphic data as boxplots.
lgrc.sdcd.genes
Sexual dimorphic and COPD differential genes
sdcd
Sexual dimorphic and COPD differential analysis

Files in this package

COPDSexualDimorphism/DESCRIPTION
COPDSexualDimorphism/NAMESPACE
COPDSexualDimorphism/NEWS
COPDSexualDimorphism/R
COPDSexualDimorphism/R/do.sdcd.boxplot.R
COPDSexualDimorphism/R/getNeighbors.R
COPDSexualDimorphism/R/my.smart.plot.R
COPDSexualDimorphism/R/pool.sd.R
COPDSexualDimorphism/R/sdcd.R
COPDSexualDimorphism/R/sdcd.core.R
COPDSexualDimorphism/R/sdcd.vmr.R
COPDSexualDimorphism/README.md
COPDSexualDimorphism/build
COPDSexualDimorphism/build/vignette.rds
COPDSexualDimorphism/data
COPDSexualDimorphism/data/lgrc.sdcd.genes.rda
COPDSexualDimorphism/inst
COPDSexualDimorphism/inst/doc
COPDSexualDimorphism/inst/doc/lgrc_sdcd_eQTL.R
COPDSexualDimorphism/inst/doc/lgrc_sdcd_eQTL.Rnw
COPDSexualDimorphism/inst/doc/lgrc_sdcd_eQTL.pdf
COPDSexualDimorphism/inst/doc/lgrc_sdcd_expression.R
COPDSexualDimorphism/inst/doc/lgrc_sdcd_expression.Rnw
COPDSexualDimorphism/inst/doc/lgrc_sdcd_expression.pdf
COPDSexualDimorphism/inst/doc/lgrc_sdcd_methp.R
COPDSexualDimorphism/inst/doc/lgrc_sdcd_methp.Rnw
COPDSexualDimorphism/inst/doc/lgrc_sdcd_methp.pdf
COPDSexualDimorphism/man
COPDSexualDimorphism/man/COPDSexualDimorphism-package.Rd
COPDSexualDimorphism/man/do.sdcd.boxplot.Rd
COPDSexualDimorphism/man/lgrc.sdcd.genes.Rd
COPDSexualDimorphism/man/sdcd.Rd
COPDSexualDimorphism/vignettes
COPDSexualDimorphism/vignettes/lgrc_sdcd_eQTL.Rnw
COPDSexualDimorphism/vignettes/lgrc_sdcd_expression.Rnw
COPDSexualDimorphism/vignettes/lgrc_sdcd_methp.Rnw