do.sdcd.boxplot: Represent sexual dimorphic data as boxplots.

In COPDSexualDimorphism: Sexual dimorphic and COPD differential analysis for gene expression and methylation.

Description

Stratify and plot data by gender and by disease status.

Usage

do.sdcd.boxplot(marker, data, copd.bool, male.bool, symbol = marker, filename = paste(marker,".pdf",sep=""), take.log = FALSE)

Arguments

marker	Character string representing the name of the marker (e.g. Ensembl gene, VMR) to plot.
data	Data to be plot. E.g. gene expression or percent methylation.
copd.bool	Boolean array corresponding to the COPD subject columns of data.
male.bool	Boolean array corresponding to the male subject columns of data.
symbol	Gene symbol associated with the marker.
filename	File name. If NA, display plot on screen.
take.log	Boolean. If true, plot in log scale.

Author(s)

J Fah Sathirapongsausti

References

Sathirapongsasuti JF, Glass K, Huttenhower C, Quackenbush J, DeMeo DL. Integrative Genomics of Sexual Dimorphism in COPD. (In Prep).

Examples

	data(lgrc.sdcd.genes)
	data(lgrc.expr.meta)
	data(lgrc.expr)
	copd.bool = (expr.meta$diagmaj == "2-COPD/Emphysema")
	male.bool = (expr.meta$gender == "1-Male")
	do.sdcd.boxplot("ENSG00000182472", expr, copd.bool, male.bool, symbol="CAPN12", filename=NA)

COPDSexualDimorphism documentation built on Sept. 12, 2016, 6:09 a.m.