Files in CRImage
CRImage a package to classify cells and calculate tumour cellularity
NAMESPACE
DESCRIPTION
build/vignette.rds
R/localThreshold.R
R/classifyStructures.R
R/colorCorrection.R
R/calculateMeanStdTarget.R
R/oregonThreshold.R
R/plotImage.R
R/classifyPen.R
R/classificationAperio.R
R/processAperio.R
R/getImageDistance.R
R/hist3d.R
R/paintCells.R
R/correctCopyNumber.R
R/convertHSVToRGB.R
R/findSlices.R
R/determineCellularity.R
R/segmentCytoplasma.R
R/createClassifier.R
R/convertRGBToHSV.R
R/Phansalkar_threshold.R
R/plotCorrectedCN.R
R/writeDensityImage.R
R/segmentStructures.R
R/numberOfNeighbors.R
R/createBinaryImage.R
R/parseFinalScan.R
R/imageCompression.R
R/SauvolaThreshold.R
R/convertRGBToLAB.R
R/localORThreshold.R
R/calculateCellularity.R
R/classifyCells.R
R/searchStructures.R
R/convertLABToRGB.R
R/labelCells.R
R/kernelSmoother.R
R/segmentImage.R
R/calculateOtsu.R
vignettes/segmentedImage.jpg
vignettes/cancerHeatmap.jpg
vignettes/labeledImage.pdf
vignettes/classifiedImage.jpg
vignettes/CRImage.Rnw
vignettes/cellularity2.pdf
vignettes/segmentedImageRaw.pdf
vignettes/segmentedImage.pdf
vignettes/imgCorrected.jpg
vignettes/cellularity2.jpg
vignettes/exImg2.jpg
vignettes/exImg3.jpg
vignettes/segmentedImageRaw.jpg
man/plotCorrectedCN.Rd
man/CRImage-package.Rd
man/classifyCells.Rd
man/SauvolaThreshold.Rd
man/correctCopyNumber.Rd
man/colorCorrection.Rd
man/convertRGBToLAB.Rd
man/CRImage-internal.Rd
man/calculateOtsu.Rd
man/convertLABToRGB.Rd
man/createClassifier.Rd
man/convertRGBToHSV.Rd
man/createBinaryImage.Rd
man/labelCells.Rd
man/calculateMeanStdTarget.Rd
man/segmentImage.Rd
man/convertHSVToRGB.Rd
man/processAperio.Rd
man/calculateCellularity.Rd
inst/doc/CRImage.pdf
inst/doc/CRImage.Rnw
inst/doc/CRImage.R
inst/extdata/penClassifier
inst/extdata/pixelClassifier
inst/extdata/referenceHist
inst/extdata/classifier_GU_Da33_0.8
inst/extdata/testClassifier
inst/extdata/exImg.jpg
inst/extdata/lImg.jpg
inst/extdata/imgCorrected.jpg
inst/extdata/trainingData.txt
inst/extdata/exImg2.jpg
inst/extdata/exImg3.jpg
inst/extdata/8905/FinalScanModified.ini
inst/extdata/8905/Da3.jpg
inst/extdata/8905/Da8.jpg
inst/extdata/8905/SlideScan.ini
inst/extdata/8905/ScanScope.icc
inst/extdata/8905/Da7.jpg
inst/extdata/8905/Ss1.jpg
inst/extdata/8905/Da0.jpg
inst/extdata/8905/Da6.jpg
inst/extdata/8905/Da5.jpg
inst/extdata/8905/Ss3.jpg
inst/extdata/8905/Da4.jpg
inst/extdata/8905/SlideMacro.jpg
inst/extdata/8905/Ss4.jpg
inst/extdata/8905/PreviewSlide.jpg
inst/extdata/8905/Da2.jpg
inst/extdata/8905/SlideLabel.jpg
inst/extdata/8905/FinalScan.ini
inst/extdata/8905/Ss2.jpg
inst/extdata/8905/index.cws
inst/extdata/8905/Da1.jpg
inst/extdata/8905/SlideThumb.jpg
