Man pages for CSAR
Statistical tools for the analysis of ChIP-seq data
| ChIPseqScore | Calculate read-enrichment scores for each nucleotide position |
| CSAR-package | Statistical tools for the analysis of ChIP-seq data |
| distance2Genes | Calculate relative positions of read-enriched regions... |
| genesWithPeaks | Provide table of genes with read-enriched regions, and their... |
| getPermutatedWinScores | Obtain the read-enrichment score distribution under the null... |
| getThreshold | Calculate the threshold value corresponding to control FDR at... |
| loadMappedReads | Load mapped reads |
| mappedReads2Nhits | Calculate number of overlapped extended reads per nucleotide... |
| permutatedWinScores | Calculate scores for permutated read-enriched regions |
| sampleSEP3_test | Partial dataset of a ChIP-seq experiment |
| score2wig | Save the read-enrichment scores at each nucleotide position... |
| sigWin | Calculate regions of read-enrichment |
