CancerSubtypes: Cancer subtypes identification, validation and visualization based on genomic data

CancerSubtypes integrates the current common computational biology methods for cancer subtypes identification and provides a standardized framework for cancer subtype analysis based on the genomic datasets.

AuthorTaosheng Xu<taosheng.x@gmail.com>, Thuc Le<Thuc.Le@unisa.edu.au>
Date of publicationNone
MaintainerTaosheng Xu<taosheng.x@gmail.com>
LicenseGPL (>= 2)
Version1.0.0

View on Bioconductor

Functions

data.checkDistribution Man page
data.imputation Man page
data.normalization Man page
DiffExp.limma Man page
drawHeatmap Man page
ExecuteCC Man page
ExecuteCNMF Man page
ExecuteiCluster Man page
ExecuteSNF Man page
ExecuteSNF.CC Man page
FSbyCox Man page
FSbyMAD Man page
FSbyPCA Man page
FSbyVar Man page
GeneExp Man page
miRNAExp Man page
saveFigure Man page
sigclustTest Man page
silhouette_SimilarityMatrix Man page
spectralAlg Man page
status Man page
survAnalysis Man page
time Man page

Files

CancerSubtypes/CancerSubtypes.Rproj
CancerSubtypes/DESCRIPTION
CancerSubtypes/NAMESPACE
CancerSubtypes/R
CancerSubtypes/R/ClusteringMethod.R CancerSubtypes/R/DataProcess.R CancerSubtypes/R/Valiation.R CancerSubtypes/R/data.R CancerSubtypes/R/featureSelection.R CancerSubtypes/R/internal.R
CancerSubtypes/README.md
CancerSubtypes/build
CancerSubtypes/build/vignette.rds
CancerSubtypes/data
CancerSubtypes/data/GeneExp.rda
CancerSubtypes/data/miRNAExp.rda
CancerSubtypes/data/status.rda
CancerSubtypes/data/time.rda
CancerSubtypes/inst
CancerSubtypes/inst/NEWS
CancerSubtypes/inst/doc
CancerSubtypes/inst/doc/CancerSubtypes-vignette.R
CancerSubtypes/inst/doc/CancerSubtypes-vignette.Rmd
CancerSubtypes/inst/doc/CancerSubtypes-vignette.html
CancerSubtypes/inst/unitTests
CancerSubtypes/inst/unitTests/test_FSbyCox.R
CancerSubtypes/man
CancerSubtypes/man/DiffExp.limma.Rd CancerSubtypes/man/ExecuteCC.Rd CancerSubtypes/man/ExecuteCNMF.Rd CancerSubtypes/man/ExecuteSNF.CC.Rd CancerSubtypes/man/ExecuteSNF.Rd CancerSubtypes/man/ExecuteiCluster.Rd CancerSubtypes/man/FSbyCox.Rd CancerSubtypes/man/FSbyMAD.Rd CancerSubtypes/man/FSbyPCA.Rd CancerSubtypes/man/FSbyVar.Rd CancerSubtypes/man/GeneExp.Rd CancerSubtypes/man/data.checkDistribution.Rd CancerSubtypes/man/data.imputation.Rd CancerSubtypes/man/data.normalization.Rd CancerSubtypes/man/drawHeatmap.Rd CancerSubtypes/man/miRNAExp.Rd CancerSubtypes/man/saveFigure.Rd CancerSubtypes/man/sigclustTest.Rd CancerSubtypes/man/silhouette_SimilarityMatrix.Rd CancerSubtypes/man/spectralAlg.Rd CancerSubtypes/man/status.Rd CancerSubtypes/man/survAnalysis.Rd CancerSubtypes/man/time.Rd
CancerSubtypes/tests
CancerSubtypes/tests/runTests.R
CancerSubtypes/vignettes
CancerSubtypes/vignettes/CancerSubtypes-vignette.Rmd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.