CancerSubtypes: Cancer subtypes identification, validation and visualization based on genomic data

CancerSubtypes integrates the current common computational biology methods for cancer subtypes identification and provides a standardized framework for cancer subtype analysis based on the genomic datasets.

AuthorTaosheng Xu<taosheng.x@gmail.com>, Thuc Le<Thuc.Le@unisa.edu.au>
Date of publicationNone
MaintainerTaosheng Xu<taosheng.x@gmail.com>
LicenseGPL (>= 2)
Version1.0.0

View on Bioconductor

Files in this package

CancerSubtypes/CancerSubtypes.Rproj
CancerSubtypes/DESCRIPTION
CancerSubtypes/NAMESPACE
CancerSubtypes/R
CancerSubtypes/R/ClusteringMethod.R CancerSubtypes/R/DataProcess.R CancerSubtypes/R/Valiation.R CancerSubtypes/R/data.R CancerSubtypes/R/featureSelection.R CancerSubtypes/R/internal.R
CancerSubtypes/README.md
CancerSubtypes/build
CancerSubtypes/build/vignette.rds
CancerSubtypes/data
CancerSubtypes/data/GeneExp.rda
CancerSubtypes/data/miRNAExp.rda
CancerSubtypes/data/status.rda
CancerSubtypes/data/time.rda
CancerSubtypes/inst
CancerSubtypes/inst/NEWS
CancerSubtypes/inst/doc
CancerSubtypes/inst/doc/CancerSubtypes-vignette.R
CancerSubtypes/inst/doc/CancerSubtypes-vignette.Rmd
CancerSubtypes/inst/doc/CancerSubtypes-vignette.html
CancerSubtypes/inst/unitTests
CancerSubtypes/inst/unitTests/test_FSbyCox.R
CancerSubtypes/man
CancerSubtypes/man/DiffExp.limma.Rd CancerSubtypes/man/ExecuteCC.Rd CancerSubtypes/man/ExecuteCNMF.Rd CancerSubtypes/man/ExecuteSNF.CC.Rd CancerSubtypes/man/ExecuteSNF.Rd CancerSubtypes/man/ExecuteiCluster.Rd CancerSubtypes/man/FSbyCox.Rd CancerSubtypes/man/FSbyMAD.Rd CancerSubtypes/man/FSbyPCA.Rd CancerSubtypes/man/FSbyVar.Rd CancerSubtypes/man/GeneExp.Rd CancerSubtypes/man/data.checkDistribution.Rd CancerSubtypes/man/data.imputation.Rd CancerSubtypes/man/data.normalization.Rd CancerSubtypes/man/drawHeatmap.Rd CancerSubtypes/man/miRNAExp.Rd CancerSubtypes/man/saveFigure.Rd CancerSubtypes/man/sigclustTest.Rd CancerSubtypes/man/silhouette_SimilarityMatrix.Rd CancerSubtypes/man/spectralAlg.Rd CancerSubtypes/man/status.Rd CancerSubtypes/man/survAnalysis.Rd CancerSubtypes/man/time.Rd
CancerSubtypes/tests
CancerSubtypes/tests/runTests.R
CancerSubtypes/vignettes
CancerSubtypes/vignettes/CancerSubtypes-vignette.Rmd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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