ChAMP
Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC

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ChAMP: Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC

ChAMP: Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC

The package includes quality control metrics, a selection of normalization methods and novel methods to identify differentially methylated regions and to highlight copy number alterations.

Getting started

Package overview README.md The Chip Analysis Methylation Pipeline

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Vignettes Man pages API and functions Files

Package details
AuthorYuan Tian [cre,aut], Tiffany Morris [ctb], Lee Stirling [ctb], Andrew Feber [ctb], Andrew Teschendorff [ctb], Ankur Chakravarthy [ctb]
Bioconductor views CopyNumber DNAMethylation MethylationArray Microarray Normalization TwoChannel
MaintainerYuan Tian <champ450k@gmail.com>
LicenseGPL-3
Version2.20.1
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R: 
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ChAMP")

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ChAMP documentation built on Nov. 8, 2020, 5:58 p.m.

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