This package provides a framework for the simulation of ChIP-seq experiments. An implementation of a simulation for nucleosome positioning experiments is provided as part of the package. Simulations for other experiments can be implemented using the provided framework.
|License:||GPL (>= 2)|
simChIP is the main driver of the simulation. To simulate different
types of experiments the functions passed to the
functions argument of
have to be replaced. See the vignettes for more detail.
Maintainer: Peter Humburg <[email protected]>
~~ Literature or other references for background information ~~
ShortRead and its dependencies
are used to handle short read and genomic sequences.
1 2 3 4
## See the accompanying vignette 'Introduction to ChIPsim' for a detailed ## example of how to use this package for nucleosome positioning simulations. ## A guide for the writing of extensions that cover other types of ## experiments is provided in 'Extending ChIPsim'.
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