API for ChIPsim
Simulation of ChIP-seq experiments

Global functions
ChIPsim Man page
ChIPsim-package Man page
bindDens2readDens Man page Source code
bindLocDens Man page Source code
decodeQuality Man page Source code
defaultControl Man page Source code
defaultErrorProb Man page Source code
defaultFunctions Man page Source code
defaultGenerator Man page Source code
defaultInit Man page Source code
defaultLastFeat Man page Source code
defaultTransition Man page Source code
distDens Man page Source code
encodeQuality Man page Source code
extractQuality Man page Source code
feat2dens Man page Source code
featureDensity Man page Source code
featureDensity.FuzzyFeature Man page Source code
featureDensity.NFRFeature Man page Source code
featureDensity.ReversePhasedFeature Man page Source code
featureDensity.StableFeature Man page Source code
featureDensity.StablePhasedFeature Man page Source code
fragDens Man page Source code
fuzzyFeature Man page Source code
indNuc Man page Source code
joinRegion Man page Source code
makeFeatures Man page Source code
nfrFeature Man page Source code
noNuc Man page Source code
phaseNuc Man page Source code
phasedFeature Man page Source code
placeFeatures Man page Source code
pos2fastq Man page Source code
print.SimulatedExperiment Source code
print.SimulatedFeature Source code
readError Man page Source code
readQualitySample Man page Source code
readSequence Man page Source code
reconcileFeatures Man page Source code
reconcileFeatures.NucleosomePosition Man page Source code
reconcileFeatures.SimulatedExperiment Man page Source code
reconcileFeatures.default Man page Source code
sampleFromFile Man page Source code
sampleReads Man page Source code
simChIP Man page Source code
simpleNames Man page Source code
solexaNames Man page Source code
stableDens Man page Source code
stableFeature Man page Source code
summary.SimulatedExperiment Source code
writeFASTQ Man page Source code
writeIllumina Man page Source code
writeReads Man page Source code
ChIPsim documentation built on May 2, 2018, 2:40 a.m.