breastCancer: Breast cancer data for clonal decomposition.
In Clomial: Infers clonal composition of a tumor
Description
Usage
Format
Details
References
See Also
Examples
Description
Counts data from multiple samples of a single primary breast cancer obtained by deep, next-generation sequencing.
The file is consist of two matrices Dt and Dc which contain the counts of the alternative alleles, and the total number of counts on each genomic loci for every tumor samples, accordingly.
Usage
1
Format
A list containing 2 matrices.
Details
Each matrix contains counts of reads mapped to 17 genomic loci for 12 tumor samples where
the column A5-2 corresponds to the normal sample.
References
Inferring clonal composition from multiple sections of a breast cancer, Zare et al., Submitted.
See Also
Examples
1
2
Clomial documentation built on Nov. 8, 2020, 8:16 p.m.
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Description Usage Format Details References See Also Examples
Description
Counts data from multiple samples of a single primary breast cancer obtained by deep, next-generation sequencing.
The file is consist of two matrices Dt and Dc which contain the counts of the alternative alleles, and the total number of counts on each genomic loci for every tumor samples, accordingly.
Usage
1 |
Format
A list containing 2 matrices.
Details
Each matrix contains counts of reads mapped to 17 genomic loci for 12 tumor samples where the column A5-2 corresponds to the normal sample.
References
Inferring clonal composition from multiple sections of a breast cancer, Zare et al., Submitted.
See Also
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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