Compute 3 two-way table statistics and p-values, with 4 different adjustments, for PubMed co-citation
This function calculates Concordance, Jaccard's index and Hubert's Γ with no adjustment, adjusting for paper size (PS), adjusting for gene size (GS) and both, to evaluate the significance of co-citation of a gene of interest and a gene list
The Entrez Gene ID for the gene of interest.
The list of Entrez Gene IDs for genes with which the co-citation of the gene of interest is to be evaluated.
The sizes of the PubMed papers for consideration.
Number of resampling for generating empirical p-values.
Statistics and resampling p-values for all 3 two-way tables along with the
4 adjustments for
geneslist based on
Testing Gene Associations Using Co-citation, by B. Ding and R. Gentleman. Bioconductor Technical Report, 2004
1 2 3 4 5
gene <- "705" geneslist <- "7216" gene.geneslist.sig(gene, geneslist, n.resamp=50)
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