A function to compute association measures between a gene of interest and a list of genes.

Description

Whether or not a gene has an association with another gene, or a set of genes is measured using co-citation in PubMed as a basis for measuring that association.

Usage

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gene.geneslist.statistic(gene, geneslist, paperLens = paperLen())

Arguments

gene

The Entrez Gene ID for the gene of interest.

geneslist

A vector of Entrez Gene ID for the set of genes.

paperLens

A vector containing the number of genes cited by each paper.

Value

To be filled in later.

Author(s)

R. Gentleman

References

Testing Gene Associations Using Co-citation, by B. Ding and R. Gentleman. Bioconductor Technical Report, 2004

See Also

twowayTable, link{gene.gene.statistic}

Examples

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  g1 = "101"
  gl = c("10014", "10015", "10016", "10017", "10018")
  pL = paperLen()
  s1 = gene.geneslist.statistic(g1, gl, pL)
  s1