Description Usage Arguments Value
calculates the probability that a gene listed in a gene set behaves like other genes in the set within the given data set
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 | calcGeneGSStat(
object,
GStoGenes,
numPerm,
Pw = rep(1, ncol(object@featureLoadings)),
nullGenes = FALSE
)
## S4 method for signature 'CogapsResult'
calcGeneGSStat(
object,
GStoGenes,
numPerm,
Pw = rep(1, ncol(object@featureLoadings)),
nullGenes = FALSE
)
|
object |
an object of type CogapsResult |
GStoGenes |
data.frame or list with gene sets |
numPerm |
number of permutations for null |
Pw |
weight on genes |
nullGenes |
logical indicating gene adjustment |
gene similiarity statistic
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