Files in CoGAPS
Coordinated Gene Activity in Pattern Sets

COPYING
DESCRIPTION
NAMESPACE
NEWS
R
R/CoGAPS.R R/GWCoGAPS.R R/RcppExports.R R/binaryA.R R/calcCoGAPSStat.R R/calcGeneGSStat.R R/calcZ.R R/createGWCoGAPSSets.R R/gapsInterPattern.R R/gapsIntraPattern.R R/gapsMapRun.R R/gapsMapTestRun.R R/gapsRun.R R/gapsTestRun.R R/generateSeeds.R R/package.R R/patternMarkers.R R/patternMatch4Parallel.R R/patternMatcher.R R/plotAtoms.R R/plotDiag.R R/plotGAPS.R R/plotP.R R/plotPatternMarkers.R R/plotSmoothPatterns.R R/postFixed4Parallel.R R/reOrderBySet.R R/reconstructGene.R R/reorderByPatternMatch.R R/residuals.R README.md
build
build/vignette.rds
data
data/GIST_TS_20084.RData
data/SimpSim.RData
data/TFGSList.RData
inst
inst/CITATION
inst/doc
inst/doc/CoGAPSUsersManual.R
inst/doc/CoGAPSUsersManual.Rnw
inst/doc/CoGAPSUsersManual.pdf
inst/scripts
man
man/CoGAPS-package.Rd man/CoGAPS.Rd man/GIST.D.Rd man/GIST.S.Rd man/GSets.Rd man/GWCoGAPS.Rd man/PatternMatcher.Rd man/SimpSim.A.Rd man/SimpSim.D.Rd man/SimpSim.P.Rd man/SimpSim.S.Rd man/binaryA.Rd man/calcCoGAPSStat.Rd man/calcGeneGSStat.Rd man/calcZ.Rd man/computeGeneGSProb.Rd man/createGWCoGAPSSets.Rd man/gapsMapRun.Rd man/gapsMapTestRun.Rd man/gapsRun.Rd man/gapsTestRun.Rd man/generateSeeds.Rd man/patternMarkers.Rd man/patternMatch4Parallel.Rd man/plotAtoms.Rd man/plotDiag.Rd man/plotGAPS.Rd man/plotP.Rd man/plotPatternMarkers.Rd man/plotSmoothPatterns.Rd man/postFixed4Parallel.Rd man/reOrderBySet.Rd man/reconstructGene.Rd man/reorderByPatternMatch.Rd man/residuals.Rd man/tf2ugFC.Rd
src
src/AtomicSupport.cc
src/AtomicSupport.h
src/GAPSNorm.cpp
src/GAPSNorm.h
src/GibbsSampler-atomic.cpp
src/GibbsSampler-init.cpp
src/GibbsSampler-update.cpp
src/GibbsSampler-util.cpp
src/GibbsSampler.h
src/GibbsSamplerMap.cpp
src/GibbsSamplerMap.h
src/Matrix.cpp
src/Matrix.h
src/RcppExports.cpp
src/cogapsR.cpp
src/cogapsmapR.cpp
src/cogapsmaptestR.cpp
src/cogapstestR.cpp
src/randgen.cpp
src/randgen.h
src/sub_func.cpp
src/sub_func.h
tests
tests/testthat
tests/testthat.R tests/testthat/test_aesthetic.R tests/testthat/test_gaps.R tests/testthat/test_seed.R tests/testthat/test_snaps.R
vignettes
vignettes/AppNote.bib
vignettes/CoGAPSUsersManual.Rnw
vignettes/GISTFigs-Amplitude.pdf vignettes/GISTFigs-Patterns.pdf vignettes/GWCoGAPSPMs.pdf vignettes/GWCoGAPSvignette.Rmd vignettes/GWCoGAPSvignette.md vignettes/ManPipePMs.pdf vignettes/ShinyApp.pdf
vignettes/ShinyApp.tiff
vignettes/chicago.sty
CoGAPS documentation built on May 31, 2017, 11:13 a.m.