Files in CoGAPS
Coordinated Gene Activity in Pattern Sets

NEWS
COPYING
DESCRIPTION
README.md
NAMESPACE
inst/CITATION
inst/doc/GWCoGAPSvignette.html
inst/doc/CoGAPSUsersManual.pdf inst/doc/CoGAPSUsersManual.R
inst/doc/CoGAPSUsersManual.Rnw
inst/doc/GWCoGAPSvignette.R inst/doc/GWCoGAPSvignette.Rmd vignettes/ManPipePMs.pdf
vignettes/ShinyApp.png
vignettes/GISTFigs-Patterns.pdf vignettes/GISTFigs-Amplitude.pdf
vignettes/ShinyApp.tiff
vignettes/ShinyApp.pdf
vignettes/CoGAPSUsersManual.Rnw
vignettes/AppNote.bib
vignettes/CoGAPSUsersManual-concordance.tex
vignettes/GWCoGAPSPMs.pdf
vignettes/chicago.sty
vignettes/GWCoGAPSvignette.Rmd R/plotDiag.R R/CoGAPS.R R/postFixed4Parallel.R R/patternMarkers.R R/calcCoGAPSStat.R R/package.R R/reOrderBySet.R R/reconstructGene.R R/scCoGAPS.R R/residuals.R R/reorderByPatternMatch.R R/patternMatcher.R R/calcGeneGSStat.R R/gapsInterPattern.R R/RcppExports.R R/plotAtoms.R R/cellMatchR.R R/createGWCoGAPSSets.R R/patternMatch4Parallel.R R/plotGAPS.R R/binaryA.R R/generateSeeds.R R/postFixed4SC.R R/plotSmoothPatterns.R R/calcZ.R R/GWCoGAPS.R R/plotP.R R/plotPatternMarkers.R R/createscCoGAPSSets.R R/gapsIntraPattern.R
src/Matrix.cpp
src/AtomicSupport.h
src/GapsAssert.h
src/RcppExports.cpp
src/GibbsSampler.cpp
src/GibbsSampler.h
src/test-runner.cpp
src/Archive.h
src/AtomicSupport.cpp
src/Makevars
src/Random.cpp
src/Algorithms.h
src/Random.h
src/Matrix.h
src/SIMD.h
src/InternalState.h
src/Cogaps.cpp
src/Algorithms.cpp
src/cpp_tests/catch.h
src/cpp_tests/testMatrix.cpp
src/cpp_tests/testAtomicSupport.cpp
src/cpp_tests/testSerialization.cpp
src/cpp_tests/testAlgorithms.cpp
src/cpp_tests/testRandom.cpp
src/cpp_tests/testGibbsSampler.cpp
man/plotP.Rd man/scCoGAPS.Rd man/GIST.D.Rd man/GWCoGAPS.Rd man/reorderByPatternMatch.Rd man/cellMatchR.Rd man/gapsRun.Rd man/SimpSim.P.Rd man/CoGAPS.Rd man/plotAtoms.Rd man/calcGeneGSStat.Rd man/SimpSim.S.Rd man/CoGapsFromCheckpoint.Rd man/gapsMapRun.Rd man/patternMatcher.Rd man/displayBuildReport.Rd man/patternMarkers.Rd man/SimpSim.D.Rd man/patternMatch4Parallel.Rd man/createscCoGAPSSets.Rd man/generateSeeds.Rd man/binaryA.Rd man/plotSmoothPatterns.Rd man/tf2ugFC.Rd man/residuals.Rd man/calcZ.Rd man/plotPatternMarkers.Rd man/scCoGapsFromCheckpoint.Rd man/GSets.Rd man/CoGAPS-package.Rd man/reOrderBySet.Rd man/SimpSim.A.Rd man/postFixed4Parallel.Rd man/createGWCoGAPSSets.Rd man/SimpSim.result.Rd man/reconstructGene.Rd man/computeGeneGSProb.Rd man/plotDiag.Rd man/postFixed4SC.Rd man/GWCoGapsFromCheckpoint.Rd man/plotGAPS.Rd man/GIST.S.Rd man/calcCoGAPSStat.Rd
build/vignette.rds
tests/testthat.R tests/testthat/test_seed.R tests/testthat/test_gaps.R tests/testthat/test_aesthetic.R tests/testthat/test_cpp.R tests/testthat/test_snaps.R
data/TFGSList.RData
data/GIST_TS_20084.RData
data/SimpSim.RData
CoGAPS documentation built on July 28, 2018, 6 p.m.