Cormotif: Correlation Motif Fit
Version 1.22.0

It fits correlation motif model to multiple studies to detect study specific differential expression patterns.

Browse man pages Browse package API and functions Browse package files

AuthorHongkai Ji, Yingying Wei
Bioconductor views DifferentialExpression Microarray
Date of publicationNone
MaintainerYingying Wei <ywei@jhsph.edu>
LicenseGPL-2
Version1.22.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("Cormotif")

Man pages

cormotiffit: Correlation Motif Fit
cormotiffitall: All Studies Correlation Motif Fit
cormotiffitfull: Full Model Motif Fit
cormotiffitsep: Individual Study Motif Fit
cormotif-internal: Correlation Motif Internal functions
generank: Rank genes based on statistics
plotIC: BIC and AIC plot
plotMotif: Correlation Motif plot
simudata2: Example dataset for Cormotif

Functions

cmfit Man page Source code
cmfitall Man page Source code
cmfitfull Man page Source code
cmfitsep Man page Source code
cormotiffit Man page Source code
cormotiffitall Man page Source code
cormotiffitfull Man page Source code
cormotiffitsep Man page Source code
generank Man page Source code
generatetype Man page Source code
limmafit Man page Source code
modt.f0.loglike Man page Source code
modt.f1.loglike Man page Source code
plotIC Man page Source code
plotMotif Man page Source code
simu2_compgroup Man page
simu2_groupid Man page
simudata2 Man page

Files

DESCRIPTION
NAMESPACE
R
R/Cormotif.R
build
build/vignette.rds
data
data/simu2_compgroup.txt
data/simu2_groupid.txt
data/simudata2.txt
inst
inst/CITATION
inst/doc
inst/doc/CormotifVignette.R
inst/doc/CormotifVignette.Rnw
inst/doc/CormotifVignette.pdf
man
man/cormotif-internal.Rd
man/cormotiffit.Rd
man/cormotiffitall.Rd
man/cormotiffitfull.Rd
man/cormotiffitsep.Rd
man/generank.Rd
man/plotIC.Rd
man/plotMotif.Rd
man/simudata2.Rd
vignettes
vignettes/CormotifVignette.Rnw
Cormotif documentation built on May 20, 2017, 10:59 p.m.