Cormotif: Correlation Motif Fit

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It fits correlation motif model to multiple studies to detect study specific differential expression patterns.

Author
Hongkai Ji, Yingying Wei
Date of publication
None
Maintainer
Yingying Wei <ywei@jhsph.edu>
License
GPL-2
Version
1.20.0

View on Bioconductor

Man pages

cormotiffit
Correlation Motif Fit
cormotiffitall
All Studies Correlation Motif Fit
cormotiffitfull
Full Model Motif Fit
cormotiffitsep
Individual Study Motif Fit
cormotif-internal
Correlation Motif Internal functions
generank
Rank genes based on statistics
plotIC
BIC and AIC plot
plotMotif
Correlation Motif plot
simudata2
Example dataset for Cormotif

Files in this package

Cormotif/DESCRIPTION
Cormotif/NAMESPACE
Cormotif/R
Cormotif/R/Cormotif.R
Cormotif/build
Cormotif/build/vignette.rds
Cormotif/data
Cormotif/data/simu2_compgroup.txt
Cormotif/data/simu2_groupid.txt
Cormotif/data/simudata2.txt
Cormotif/inst
Cormotif/inst/CITATION
Cormotif/inst/doc
Cormotif/inst/doc/CormotifVignette.R
Cormotif/inst/doc/CormotifVignette.Rnw
Cormotif/inst/doc/CormotifVignette.pdf
Cormotif/man
Cormotif/man/cormotif-internal.Rd
Cormotif/man/cormotiffit.Rd
Cormotif/man/cormotiffitall.Rd
Cormotif/man/cormotiffitfull.Rd
Cormotif/man/cormotiffitsep.Rd
Cormotif/man/generank.Rd
Cormotif/man/plotIC.Rd
Cormotif/man/plotMotif.Rd
Cormotif/man/simudata2.Rd
Cormotif/vignettes
Cormotif/vignettes/CormotifVignette.Rnw