plotIC: BIC and AIC plot

Description Usage Arguments Details Author(s) References Examples

View source: R/Cormotif.R

Description

This function plots BIC and AIC values for all fitted motif models.

Usage

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plotIC(fitted_cormotif)

Arguments

fitted_cormotif

The object obtained from cormotiffit.

Details

The left graph is the BIC plot and the right graph is the AIC plot.

Author(s)

Hongkai Ji, Yingying Wei

References

Ji, H., Wei, Y.,(2011) Correlation Motif. Unpublished

Examples

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data(simudata2)
n<-nrow(simudata2)
m<-ncol(simudata2)
#the expression data is from the second column to \eqn{m}
exprs.simu2<-as.matrix(simudata2[,2:m])

#prepare the group ID number for each sample array
data(simu2_groupid)

#prepare the design matrix for each group of samples
data(simu2_compgroup)

#fit 2 correlation motif to the data
motif.fitted<-cormotiffit(exprs.simu2, simu2_groupid,simu2_compgroup,K=2)

plotIC(motif.fitted)

Cormotif documentation built on May 2, 2018, 3:18 a.m.