plot3D: Visualization of 3D data of CYT

Description Usage Arguments Value Examples

View source: R/plot3D.R

Description

Visualization of 3D data of CYT

Usage

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plot3D(
  object,
  item.use = c("PC1", "PC2", "PC3"),
  color.by = "stage",
  order.by = NULL,
  size = 1,
  angle = 60,
  scale.y = 0.8,
  category = "categorical",
  main = "3D plot of CYT",
  color.theme = NULL,
  ...
)

Arguments

object

A CYT object

item.use

character. Items use to 3D plot, axes x and y and z must be numeric.

color.by

character. Dot or mesh color by which character. It can be one of the column of plot.meta, or it can be just "density" (the default value).

order.by

character. Order of color theme.

size

numeric. size of the dot

angle

numberic. angle of the plot

scale.y

numeric. scale of y axis related to x- and z axis

category

character. numeric or categorical

main

character. title of the plot

color.theme

vector. Color themes use in the plot.

...

options to pass on to the scatterplot3d function.

Value

gplots figure

Examples

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cyt.file <- system.file("extdata/cyt.rds", package = "CytoTree")
cyt <- readRDS(file = cyt.file)

plot3D(cyt, item.use = c("DC_2","DC_1","DC_3"), color.by = "stage",
       size = 0.5, angle = 60, color.theme = c("#FF99FF","#7A06A0","#FF3222"))

CytoTree documentation built on Nov. 10, 2020, 2 a.m.