DART: Denoising Algorithm based on Relevance network Topology

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Denoising Algorithm based on Relevance network Topology (DART) is an algorithm designed to evaluate the consistency of prior information molecular signatures (e.g in-vitro perturbation expression signatures) in independent molecular data (e.g gene expression data sets). If consistent, a pruning network strategy is then used to infer the activation status of the molecular signature in individual samples.

Author
Yan Jiao, Katherine Lawler, Andrew E Teschendorff, Charles Shijie Zheng
Date of publication
None
Maintainer
Charles Shijie Zheng <charles_zheng@live.com>
License
GPL-2
Version
1.22.0

View on Bioconductor

Man pages

BuildRN
Builds the relevance correlation network
DART-package
Denoising Algorithm based on Relevance network Topology
dataDART
Example data for DART package
DoDART
Main function of DART
DoDARTCLQ
Improved edition of DoDART
EvalConsNet
Evaluates the consistency of the inferred relevance...
PredActScore
Computes the DART activation score of the model signature in...
PruneNet
Prunes relevance network to allow only edges that are...

Files in this package

DART/DESCRIPTION
DART/NAMESPACE
DART/R
DART/R/BuildRN.R
DART/R/DoDART.R
DART/R/DoDARTCLQ.R
DART/R/EvalConsNet.R
DART/R/PredActScore.R
DART/R/PruneNet.R
DART/build
DART/build/vignette.rds
DART/data
DART/data/dataDART.rda
DART/data/datalist
DART/inst
DART/inst/CITATION
DART/inst/NEWS
DART/inst/doc
DART/inst/doc/DART.R
DART/inst/doc/DART.Rnw
DART/inst/doc/DART.pdf
DART/man
DART/man/BuildRN.Rd
DART/man/DART-package.Rd
DART/man/DoDART.Rd
DART/man/DoDARTCLQ.Rd
DART/man/EvalConsNet.Rd
DART/man/PredActScore.Rd
DART/man/PruneNet.Rd
DART/man/dataDART.Rd
DART/vignettes
DART/vignettes/DART.Rnw