API for DEXSeq
Inference of differential exon usage in RNA-Seq
| Global functions | |
|---|---|
| $<-,DEXSeqDataSet-method | Man page |
| DEXSeq | Man page Source code |
| DEXSeq-defunct | Man page |
| DEXSeqDataSet | Man page Source code |
| DEXSeqDataSet-class | Man page |
| DEXSeqDataSetFromHTSeq | Man page Source code |
| DEXSeqDataSetFromSE | Man page Source code |
| DEXSeqHTML | Man page Source code |
| DEXSeqResults | Man page Source code |
| DEXSeqResults-class | Man page |
| [,DEXSeqDataSet,ANY,ANY,ANY-method | Man page |
| [,DEXSeqDataSet,ANY,ANY-method | Man page |
| [,DEXSeqDataSet,ANY-method | Man page |
| [,DEXSeqDataSet-method | Man page |
| `exonIDs<-` | Source code |
| `featureIDs<-` | Source code |
| `geneIDs<-` | Source code |
| `groupIDs<-` | Source code |
| arrangeCoefs | Source code |
| colData<-,DEXSeqDataSet,DataFrame-method | Man page |
| counts | Man page |
| counts,DEXSeqResults-method | Man page |
| counts.DEXSeqResults | Source code |
| drawGene | Source code |
| drawPlot | Source code |
| estimateDispersions | Man page |
| estimateDispersions,DEXSeqDataSet-method | Man page |
| estimateDispersions.DEXSeqDataSet | Source code |
| estimateExonFoldChanges | Man page Source code |
| estimateSizeFactors | Man page |
| estimateSizeFactors,DEXSeqDataSet-method | Man page |
| estimateSizeFactors.DEXSeqDataSet | Source code |
| exonIDs | Man page Source code |
| exonIDs<- | Man page |
| featureCounts | Man page Source code |
| featureIDs | Man page Source code |
| featureIDs<- | Man page |
| findOverlaps | Man page |
| findOverlaps,DEXSeqResults,GenomicRanges-method | Man page |
| findOverlaps-methods | Man page |
| findOverlaps.DEXSeqResults | Source code |
| geneIDs | Man page Source code |
| geneIDs<- | Man page |
| getEffectsForExonsSM | Source code |
| getEffectsForGene | Source code |
| getEffectsForGeneBM | Source code |
| getEffectsForPlotting | Source code |
| groupIDs | Man page Source code |
| groupIDs<- | Man page |
| makeBigModelFrame | Source code |
| makePlotPage | Source code |
| makevstaxis | Source code |
| modelFrameSM | Source code |
| perGeneQValue | Man page Source code |
| perGeneQValueBySimulation | Source code |
| perGeneQValueExact | Source code |
| plotDEXSeq | Man page Source code |
| plotDispEsts | Man page |
| plotDispEsts,DEXSeqDataSet-method | Man page |
| plotDispEsts.DEXSeqDataSet | Source code |
| plotMA | Man page |
| plotMA,DEXSeqDataSet-method | Man page |
| plotMA,DEXSeqResults-method | Man page |
| plotMA-methods | Man page |
| plotMA.DEXSeqDataSet | Source code |
| plotMA.DEXSeqResults | Source code |
| rmDepCols | Source code |
| sampleAnnotation | Man page Source code |
| show.DEXSeqResults | Source code |
| subsetByOverlaps | Man page |
| subsetByOverlaps,DEXSeqResults,GenomicRanges-method | Man page |
| subsetByOverlaps-methods | Man page |
| subsetByOverlaps.DEXSeqResults | Source code |
| testForDEU | Man page Source code |
| vst | Source code |
