DEXSeqResults: DEXSeqResults object

In DEXSeq: Inference of differential exon usage in RNA-Seq

Description

The DEXSeqResults object is a subclass of a DataFrame. It collects relevant information from a DEXSeqDataSet object with the results generated from testing for differences in exon usage.

Usage

  DEXSeqResults( object, independentFiltering=TRUE, filter)

Arguments

object	A DEXSeqDataSet object.
independentFiltering	Logical indicating whether independent filtering should be applied automatically.
filter	A vector of filter statistics over which the independent filtering will be optimized. The default is the normalized exon means.

Value

A DEXSeqResults object.

Examples

  data(pasillaDEXSeqDataSet, package="pasilla")
  dxd <- estimateSizeFactors( dxd )
  dxd <- estimateDispersions( dxd )
  dxd <- testForDEU( dxd )
  dxr <- DEXSeqResults( dxd )

DEXSeq documentation built on Nov. 8, 2020, 5:11 p.m.