DNAcopy-internal: Internal DNAcopy functions

In DNAcopy: DNA copy number data analysis

Description

Internal functions of package DNAcopy.

Usage

changepoints(genomdat, data.type = "logratio", alpha = 0.01, weights = NULL,
                 sbdry, sbn, nperm = 10000, p.method="hybrid", min.width=2,
                 kmax=25, nmin = 200, trimmed.SD = NULL, undo.splits = "none",
                 undo.prune = 0.05, undo.SD = 3, verbose = 1, ngrid=100,
                 tol=1e-6) 
changepoints.prune(genomdat, lseg, change.cutoff=0.05)
changepoints.sdundo(genomdat, lseg, trimmed.SD, change.SD=3)
trimmed.variance(genomdat, trim=0.025)
inflfact(trim)
exon.changepoint(exondat, ngrid=100, tol=1e-6)

Details

These are not to be called directly by the user

DNAcopy documentation built on Nov. 8, 2020, 5:48 p.m.